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Note: If you're using a version of Sailfish prior to v0.7.0, please consider upgrading to the latest version as soon as is convenient. It contains substantial improvements over v0.6.3 in terms of both accuracy and speed.

If you're interested in Sailfish, you might also want to take a look at our new software, Salmon.

The documentation for Sailfish is being migrated to ReadTheDocs. To see the latest documentation there.

Documentation, Build Status and Gitter Channel:

Documentation Status Build Status Join the chat at https://gitter.im/kingsfordgroup/ailfish

Requirements:

To build Sailfish from source, the following are required:

  • A C++-11 compliant version of GCC. Any version of g++ >= 4.7 should work.

  • CMake. Sailfish uses the CMake build system to check, fetch and install dependencies, and to compile and install Sailfish. CMake is available for all major platforms (though Sailfish is currently unsupported on Windows.)

Installation and Usage:

For information about building, installing or using Sailfish, please refer to the documentation.

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/\>.

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Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

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