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"IndexError: list index out of range" while using --pcatype fithic #64
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It seems like there is an issue with the bias file NB_St14_20Kb.biases.gz. |
Does are the my biases file I use: NB_St10_20Kb.biases.gz Thank you |
After looking at the issue more carefully, I found that the error is related to fithic. |
Hi, I looked at the ay-lab/fithic/issues/54 and it think my biases file doesn't have the right format Format from ay-lab/fithic/issues/54 :
My biases format (from HiC-Pro ICE output):
Do I have to convert the HiC-pro biases format to a fithic format using hicpro2fithic.py ? Thanks! :) |
Yes! |
Ok thanks, I have error when using hicpro2fithic.py, I will posted them in hicpro github |
please post here as well. we developed that script. |
Please post to the fithic github repository actually. |
Here is my fithic error:
inputs: biase
fragments
interactions
Thanks a lot! |
Ok I managed to fix the syntax error replacing in dcHIC.r script line 1495 python3 path by "bash" previous: fix: Now I am still have the out of range issue even using the output of hicpro2fithic
|
I see you posted this issue in the fithic repository too. |
Hi,
I am running into an error while running dcHIC fithic step:
At some point the index of a list it is trying to access is out of range, do you have any idea where this would be coming from ?
Thanks a lot,
Best,
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