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In the code for primer trimming insertionSort gets called every time get_overlapping_primers is called, creating a slowdown
std::vector<primer> test = insertionSort(primers, primers.size());
This should only be called once.
The text was updated successfully, but these errors were encountered:
@cmaceves we switched to ivar 1.3.2 last week and noticed it was taking 10x (!) longer to run on our 384 samples (~1 M reads each).
Would this bug explain the slowdown in ivar trim?
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hi @tseemann! that's correct, it is causing the slowdown. we're aiming for a fast turn around time on 1.3.3 to address that oversight.
addressed in PR #155
cmaceves
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In the code for primer trimming insertionSort gets called every time get_overlapping_primers is called, creating a slowdown
This should only be called once.
The text was updated successfully, but these errors were encountered: