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Standalone 12/N: Implement and test ZarrV3ArrayWriter #304

Merged
merged 93 commits into from
Oct 4, 2024
Merged

Standalone 12/N: Implement and test ZarrV3ArrayWriter #304

merged 93 commits into from
Oct 4, 2024

Commits on Sep 17, 2024

  1. Move driver source files and tests to a separate directory.

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  2. Define the Zarr streaming API.

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  3. Define the Zarr logger.

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  4. Rename zarr.h to acquire.zarr.h.

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  5. Merge branch 'standalone-sequence-3' into standalone-sequence-4

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  6. Instantiate the logger's mutex.

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  7. Implement and test stream settings, with API setters and getters.

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  8. Wrap C API functions in extern "C" {}

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  9. Document the StreamSettings getters.

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  10. Merge remote-tracking branch 'upstream/standalone-sequence-3' into st… 

    …andalone-sequence-4
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  11. Merge remote-tracking branch 'upstream/standalone-sequence-4' into st… 

    …andalone-sequence-4b
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  12. call it 'type'

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  13. Merge branch 'standalone-sequence-3' into standalone-sequence-4

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  14. Merge branch 'standalone-sequence-3' into standalone-sequence-4b

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  15. No need to double CHECK the settings pointer.

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  16. Implement ZarrStream_s.

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  17. Test ZarrStream_s.

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  18. Implement the rest of the Zarr API functions.

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  19. Implement and test Zarr common functions.

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  20. Implement and test ThreadPool, S3Connection{Pool}. Also implement Blo… 

    …sc compression parameters.
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  21. Implement and test Sink and SinkCreator types.

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  22. Implement and test base ArrayWriter.

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  23. Implement and test ZarrV2ArrayWriter.

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  24. Implement and test ZarrV3ArrayWriter.

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Commits on Sep 18, 2024

  1. Document that ZarrStream_append will block for compression and flushing

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  2. Merge branch 'standalone-sequence-3' into standalone-sequence-4

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  3. Merge branch 'standalone-sequence-4' into standalone-sequence-4b

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  4. Merge branch 'standalone-sequence-4b' into standalone-sequence-5

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  5. Merge branch 'standalone-sequence-5' into standalone-sequence-6

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  6. Merge branch 'standalone-sequence-6' into standalone-sequence-7

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  7. Merge branch 'standalone-sequence-7' into standalone-sequence-8

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  8. Merge branch 'standalone-sequence-8' into standalone-sequence-9

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  9. Merge branch 'standalone-sequence-9' into standalone-sequence-10

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  10. Merge branch 'standalone-sequence-10' into standalone-sequence-11

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  11. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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  12. Respond to PR comments.

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  13. Merge branch 'standalone-sequence-2' into standalone-sequence-3

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  14. Merge remote-tracking branch 'upstream/main' into standalone-sequence-3

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  15. Merge remote-tracking branch 'upstream/main' into standalone-sequence-4

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  16. Merge branch 'standalone-sequence-4' into standalone-sequence-4b

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  17. Merge branch 'standalone-sequence-4b' into standalone-sequence-5

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  18. Merge branch 'standalone-sequence-5' into standalone-sequence-6

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  19. Merge branch 'standalone-sequence-6' into standalone-sequence-7

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  20. Merge branch 'standalone-sequence-7' into standalone-sequence-8

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  21. Merge branch 'standalone-sequence-8' into standalone-sequence-9

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  22. Merge branch 'standalone-sequence-9' into standalone-sequence-10

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  23. Merge branch 'standalone-sequence-10' into standalone-sequence-11

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  24. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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Commits on Sep 20, 2024

  1. Respond to PR comments.

    @aliddell
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  2. Merge branch 'standalone-sequence-3' into standalone-sequence-4

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  3. Merge branch 'standalone-sequence-4' into standalone-sequence-5

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  4. Merge branch 'standalone-sequence-6' into standalone-sequence-5

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  5. wip

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  6. Reorder and document settings fields

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  7. Merge branch 'standalone-sequence-3' into standalone-sequence-5

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  8. wip

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  9. Remove version specifier from ZarrStream_create.

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  10. Merge branch 'standalone-sequence-3' into standalone-sequence-5

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  11. wip

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  12. Document the settings struct a bit.

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  13. Merge branch 'standalone-sequence-3' into standalone-sequence-5

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  14. wip

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  15. Fix up some parameters.

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  16. Merge branch 'standalone-sequence-3' into standalone-sequence-5

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  17. Update ZarrStream implementation to use settings struct.

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  18. Remove some redundant code

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  19. Merge branch 'standalone-sequence-5' into standalone-sequence-7

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  20. Merge branch 'standalone-sequence-7' into standalone-sequence-8

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  21. Merge branch 'standalone-sequence-8' into standalone-sequence-9

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  22. Merge branch 'standalone-sequence-9' into standalone-sequence-10

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  23. Merge branch 'standalone-sequence-10' into standalone-sequence-11

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  24. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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  25. Merge branch 'standalone-sequence-8' into standalone-sequence-9

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  26. Merge branch 'standalone-sequence-9' into standalone-sequence-10

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Commits on Sep 23, 2024

  1. Use string_view

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  2. Merge branch 'standalone-sequence-10' into standalone-sequence-11

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  3. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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Commits on Sep 27, 2024

  1. Merge remote-tracking branch 'upstream/main' into standalone-sequence-9

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  2. Merge branch 'standalone-sequence-9' into standalone-sequence-10

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  3. Merge branch 'standalone-sequence-10' into standalone-sequence-11

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  4. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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Commits on Oct 3, 2024

  1. Merge remote-tracking branch 'upstream/main' into standalone-sequence-11

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  2. Merge remote-tracking branch 'upstream/main' into standalone-sequence-11

    @aliddell
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  3. Respond to PR comments

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  4. Merge branch 'standalone-sequence-11' into standalone-sequence-12

    @aliddell
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  5. Put #include <string> back

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  6. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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  7. Respond to PR comments.

    @aliddell
    aliddell committed Oct 3, 2024
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  8. Remove dead files

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  9. Merge branch 'standalone-sequence-11' into standalone-sequence-12

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  10. Some cleanup.

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Commits on Oct 4, 2024

  1. Merge remote-tracking branch 'upstream/main' into standalone-sequence-12

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  2. Respond to PR comments.

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