This is the VDI Handler for RNA Seq datasets. These datasets contain FPKM data in .txt files, and optionally bigwig files used for genome browser tracks.
See the VDI Handler Example repo for background.
For more details about the scripts themselves and their inputs and outputs see the VDI Plugin Handler Server readme.
The import script does its best to validate the dataset. On the assumption that the dataset is provided by the VEuPathDB RNA Seq Exporter, we hope that it was constructed validly. It is possible the validator will miss ways the dataset could go wrong.
Here is a manifest file from a stranded dataset
SRR5260550.fastq-forward SRR5260550.fastq-forward.bw firststrand
SRR5260550.fastq-reverse SRR5260550.fastq-reverse.bw secondstrand
SRR5260551.fastq-forward SRR5260551.fastq-forward.bw firststrand
SRR5260551.fastq-reverse SRR5260551.fastq-reverse.bw secondstrand
SRR5260552.fastq-forward SRR5260552.fastq-forward.bw firststrand
SRR5260552.fastq-reverse SRR5260552.fastq-reverse.bw secondstrand
SRR5260550.fastq-one SRR5260550.fastq-one.txt sense
SRR5260550.fastq-two SRR5260550.fastq-two.txt antisense
SRR5260551.fastq-one SRR5260551.fastq-one.txt sense
SRR5260551.fastq-two SRR5260551.fastq-two.txt antisense
SRR5260552.fastq-one SRR5260552.fastq-one.txt sense
SRR5260552.fastq-two SRR5260552.fastq-two.txt antisense