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setup.py
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setup.py
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# -*- coding: utf-8 -*-
# @Time : 2022/6/6 17:19
# @Author : Tory Deng
# @File : setup.py
# @Software: PyCharm
from setuptools import find_packages
from setuptools import setup
with open('README.md') as f:
LONG_DESCRIPTION = f.read()
setup(
name='GeneClust',
version='1.0.0',
description='A cofunctional grouping-based approach for non-redundant feature gene selection in '
'unannotated single-cell RNA-seq',
long_description=LONG_DESCRIPTION,
long_description_content_type='text/markdown',
author='Tao Deng',
author_email='taodeng@link.cuhk.edu.cn',
url='https://github.com/ToryDeng/scGeneClust',
license='GPL v3',
classifiers=[
"Programming Language :: Python :: 3",
"License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
"Operating System :: OS Independent"
],
python_requires=">=3.9",
install_requires=[
'anndata>=0.8.0',
'numpy>=1.21.6',
'setuptools>=59.5.0',
'scanpy>=1.9.1',
'scipy>=1.9.3',
'loguru>=0.6.0',
'hdbscan>=0.8.29',
'scikit-learn>=1.2.0',
'igraph>=0.10.2',
'leidenalg>=0.9.1',
'pandas>=1.5.2',
'SpaGCN>=1.2.5',
'squidpy>=1.2.2',
'torch>=1.13.1',
'opencv-python>=4.6.0',
],
packages=find_packages(exclude=('tests', 'figures', 'data', 'docs', 'notebooks')),
zip_safe=False,
)