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reading in h5ad file #23

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anamaria-uofg opened this issue Jul 13, 2023 · 1 comment
Open

reading in h5ad file #23

anamaria-uofg opened this issue Jul 13, 2023 · 1 comment

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@anamaria-uofg
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Hi. I'm trying to read in a h5ad file which was generated from seurat R package. I am using this function: adata = sdm.read_spatialdm_h5ad(filename), but I get KeyError: 'geneInter'. Is this not the right way to read in the data? Thanks.

@leeyoyohku
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Hey @anamaria-uofg . Thanks for using our package.
Please try reading the h5ad file using scanpy and then run spatialdm as described in our tutorials.
sdm.read_spatialdm_h5ad could be useful to read intermediate spatialdm objects.

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