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CellPose produces a mask for one channel only. Running CellPose for every channel is too computationally intensive. This can be solved by using CellPose to get a mask that covers the entire cell, and subsequently refining that mask per channel.
The text was updated successfully, but these errors were encountered:
Refining the mask within the parent patch proved difficult, because very little context is available around the cell. It should be feasible though, so I will revisit this in the future.
Currently it is only possible to generate a new CellPose mask for a second channel. These segment are then assigned to the parent cell based on overlap.
CellPose produces a mask for one channel only. Running CellPose for every channel is too computationally intensive. This can be solved by using CellPose to get a mask that covers the entire cell, and subsequently refining that mask per channel.
The text was updated successfully, but these errors were encountered: