- Cancer Clustering Collaborative - Inferring NF2 Treatment Based on Similarity to characterized cancers
- Details of our analysis can before found in our poster and final presentation
Codes for the main analysis steps in our project are listed here.
- VCF Filtering: VCF_filtering.ipynb
- TCGA Data Loading/Processing: Broad FireHose Dat.ipynb
- Mutational Signature and mutated gene/GO term Extraction, preparing matrices for clustering: tcga_processing.R
- Dimensional reduction and Cluster Analysis: Cluster Analysis.ipynb
- Gene Mutation Localization: NF2 VCF Analysis.ipynb