Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Flip structure extracts for reverse strand ScanFolds #28

Open
rjandr opened this issue Jun 11, 2021 · 2 comments
Open

Flip structure extracts for reverse strand ScanFolds #28

rjandr opened this issue Jun 11, 2021 · 2 comments
Assignees
Labels
bug Something isn't working

Comments

@rjandr
Copy link
Collaborator

rjandr commented Jun 11, 2021

For each extracted structure in the extracted structure list, if strand == reverse, flip the coordinates as the gff file is written.

@rjandr rjandr added the bug Something isn't working label Jun 11, 2021
@rjandr rjandr self-assigned this Jun 11, 2021
@njbooher
Copy link
Contributor

from #31 #32

For ScanFold RNAfold the reverse strand extracted structures still appear to be flipped for visible and selected scans.

This was referenced Jun 22, 2021
@rjandr
Copy link
Collaborator Author

rjandr commented Sep 24, 2021

Put some potential fixes in commit 6de4b64

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants