Summary

A java code analysing the Bending Stiffness of Actin Filament Experiment.

• Reads coordinates from snake.txt of a measured filament (an example is in the images directory)
• Calculates the mean squared displacement (MSD) and contour length from data
• Error calculation in persistence length and contour length are saved in mathematica directory.
• (optional) Modify config.properties as needed.

Running the Demo

1. Place your snake.txt and elongation.txt files in the data directory (an example exists).
2. Compile and run the Snake class.

javac -d out src/Snake.java
java -cp out Snake