-
Notifications
You must be signed in to change notification settings - Fork 1
/
plmt.yaml
64 lines (64 loc) · 3.36 KB
/
plmt.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
---
title: Simulations of biomass dynamics in community food webs
short: The befwm package
bibliography: default.json
csl: plmt/plab.csl
author:
- family: Delmas
given: Eva
affiliation: 1, 2
id: ed
orcid: 0000-0002-6238-229X
- family: Brose
given: Ulrich
orcid: 0000-0001-9156-583X
affiliation: 3, 4
- family: Gravel
given: Dominique
orcid: 0000-0002-4498-7076
affiliation: 2, 5
- family: Stouffer
given: Daniel B.
orcid: 0000-0001-9436-9674
affiliation: 6
- family: Poisot
given: Timothée
affiliation: 1, 2
email: tim@poisotlab.io
id: tp
orcid: 0000-0002-0735-5184
affiliation:
- id: 1
text: Université de Montréal, Département de Sciences Biologiques
- id: 2
text: Québec Centre for Biodiversity Sciences
- id: 3
text: German Centre for Integrative Biodiversity Research (iDiv)
- id: 4
text: Systemic Conservation Biology, J. F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen
- id: 5
text: Université de Sherbrooke, Département de Biologie
- id: 6
text: Centre for Integrative Ecology, School of Biological Sciences, University of Canterbury, Christchurch, New Zealand
keyword:
- k: metabolic theory of ecology
- k: bio-energetic model
- k: allometric scaling
- k: food webs
- k: community ecology
figure:
- id: carrying
caption: Effect of increasing the carrying capacity of the resource for different levels of competition ($\alpha \in \left[0.9, 1.1\right]$). For conditions of neutral coexistence or coexistence ($\alpha \leq 1$), diversity is stable until $K \approx 5$. For conditions of competition exclusion ($\alpha > 1$), diversity increases for $K < 5$, and decreases after.
short: Effect of varying the carrying capacity.
file: carryingcapacity.pdf
- id: vertebrate
caption: The peak of stability, in terms of allometric scaling, differs between vetebrates and invertebrates. Note that the \emph{y} axis is reversed, since more negative values indicate less variation, and therefore more temporal stability. The shaded area represents negative scaling, \emph{i.e.} predators are smaller than their preys.
short: Stability as a function of organism type and allometric scaling.
file: vertebrate.pdf
- id: connectance
caption: Although maximal species persistence is reached for values of inter-specific competition lower than unity, the increased trophic control at higher connectances allow coexistence even under stronger competition. The shaded area represents values of $\alpha$ smaller than unity, \emph{i.e.} coexistence is favored.
short: Connectance and competition affect species persistence.
file: connectance.pdf
date: \today
abstract: \textbf{1.} Food webs are the backbone upon which biomass flows through ecosystems. Dynamical models of biomass can reveal how the structure of food webs is involved in many key ecosystem properties, such as persistence, stability, etc..\newline\textbf{2.} In this contribution, we present \texttt{befwm}, an implementation of the bio-energetic model, in the high-performance computing language Julia.\newline\textbf{3.} We illustrate how this package can be used to conduct numerical experiments in a reproducible and standard way.\newline\textbf{4.} A reference implementation of this widely used model will ease reproducibility and comparison of results across studies.
...