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Update gsd/develop from develop 2020/11/18 #46
Update gsd/develop from develop 2020/11/18 #46
Commits on Oct 2, 2020
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Use top-level build.sh in regression test compile scripts (ufs-commun…
…ity#209) * Use top-level build.sh to compile executables in for regression tests * Do not copy the executable from build to the top-level directory
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Commits on Oct 7, 2020
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Preparation for S2S cmake (ufs-community#213)
- All `#ifdef OPENMP` are replaced with `#ifdef _OPENMP` to follow standard compiler macro for OpenMP. - CCPP code generation is moved inside of `FV3/`. This will be redundant when the Data Atmosphere component comes in. Updates to the python script was performed to remove the hard-wired `FV3/` path name in the file. - `cmake/GNU.cmake` and `cmake/Intel.cmake` hard-wire global compiler definitions with `add_definitions`. These are now applied with `target_compile_definitions`. - CMakeLists.txt is passed through cmake-norm checker. - `INSTALL_INTERFACE` is added, so that this component can be installed and linked in downstream applications e.g. JEDI. This may be incomplete, so will need more work.
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Commits on Oct 9, 2020
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Merge NCAR feature/transition-to-capgen-1 (prepare for cap_gen.py, st…
…ep 1) to develop (ufs-community#216) Preparation for transitioning to the next-generation code generator of the ccpp-framework (cap_gen.py).
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Commits on Oct 19, 2020
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Change horizontal advection options in input namelist (ufs-community#215
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Commits on Oct 20, 2020
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Enable building of coupled model (ufs-community#217)
* Option to build coupled model * fix in build.sh * update modulefiles for orion, hera and wcoss to load pio. Make PIO optional in CMakeLists.txt if not building S2S * FMS needs to be linked in MOM6 objects. Add 32BIT and S2S check * add S2S option to MAKE_OPT * Add standard s2s tests * add CICE_IO option (default: NetCDF). Add MOM6 solo executable option (default: OFF) MOM6 library and NUOPC cap are 2 separate entities. * add debug flags for MOM6 and CICE from @MinsukJi-NOAA * add debug modulefiles for hera, orion and wcoss_dell_p3 * enable VERBOSE on build only when requested. Remove -warn flags from CMEPS and MOM6 as they drown out any error messages. The warnings should be resolved at the upstream repos. When building with -DDEBUG=ON, set CMAKE_BUILD_TYPE=Debug. Co-authored-by: Dusan Jovic <dusan.jovic@noaa.gov>
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Commits on Oct 21, 2020
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add RT_suffix for warm start dependencies add nsout as a variable in model_configure white space
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Commits on Oct 22, 2020
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Merges in changes from final S2S PR (194)
Fixes CA test for coupled model Uses RESTART_N for the coupled model Removes CNTLMED from tests since weather RT does not use it links parm/fd_nems.yaml from CMEPS/mediator
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Add optional data atmoshpere component (ufs-community#225)
* add DATM submodule * point to aerorahul fork of DATM * update CMakeList.txt to build data atmosphere. Add compile test only since there are currently no regression tests for data atmosphere * update README.md * missed rsync from develop * Update README.md * update DATM submodule pointer and point to NOAA-EMC/NEMSdatm * create MOM6 solo executable for use in SOCA science * add compilation tests for s2s and datm for hera.gnu * commit wcoss_cray RT log, hera.intel RT log * rsync S2S baselines for intel only on hera and orion * add orion.intel RT log * add hera.gnu RT log * add wcoss_dell_p3 RT log
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Commits on Oct 23, 2020
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Commits on Oct 26, 2020
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Add low resolution coupled tests (ufs-community#232)
Replaces current coupled tests, default vars and other files to implement low resolution tests from ufs-s2s-model in the unified repository. See ufs-s2s-model PR # 204 (ufs-community/ufs-s2s-model#204) and PR # 194 (ufs-community/ufs-s2s-model#194) for more detail.
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Commits on Oct 30, 2020
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Add new tests for DATM-MOM6-CICE6 model (ufs-community#256)
* Added the following files for datm-mom6-cice6 tests: fv3_conf/cpld_datm_cfsr.IN fv3_conf/cpld_datm_gefs.IN parm/datm_configure.IN parm/datm_data_table.IN parm/input.mom6.nml.IN parm/nems.configure.datm.IN tests/datm_ocn_ice_mx025_cfsr tests/datm_ocn_ice_mx025_gefs tests/datm_ocn_ice_mx100_cfsr tests/datm_ocn_ice_mx100_gefs Revised default_vars.sh and run_test.sh. * Removed blank space in some coupled test files. * Revised scripts. * Revised test description. * Revised scripts and added log file from Hera. * Added log file from Orion.
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Commits on Nov 3, 2020
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Add parallel netcdf capability for regional grids (ufs-community#206)
* update FV3 and NEMS with regional parellel netcdf and output restart/forecast time at non-integer forecast time * add fv3_ccpp_regional_quilt_netcdf_parallel test * comment out fv3_ccpp_regional_quilt_netcdf_parallel as it needs nccmp (in PR#261) * update to nems develop branch * update orion log files * update cray and hera RT log files; skip-ci * update dell log files * point fv3 and nems back to develop branch Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com>
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Commits on Nov 5, 2020
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Add/update HWRF physics (ufs-community#223)
This PR adds missing HWRF physics parameterizations and updates the Ferrier-Aligo microphysics: - WRFv4 Noah LSM - GFDL surface layer - Unified HEDMF PBL - icloud=4 option in RRTMG In addition, this PR: - cleans up old/unused/unnecessary HWRF regression tests - adds the missing `effr_in=.true.` for all Thompson MP based runs (there is now a guard in fv3atm's `GFS_typedefs.F90` to prevent running Thompson MP with `effr_in=.false.` - shortens the runtime for the `fv3_ccpp_rrfs_v1beta` run from 48h to 24h - in ccpp-physics: update `tsfc` correctly when there is ice on open water grid points (fixes NCAR/ccpp-physics#515) - set `OMP_STACKSIZE` in orion and wcoss_dell_p3 job submission scripts to avoid errors with threaded tests Co-authored-by: Bin Liu <bin.liu@noaa.gov> Co-authored-by: Jili Dong <Jili.Dong@noaa.gov> Co-authored-by: Zhan Zhang <zhan.zhang@noaa.gov> Co-authored-by: Grant Firl <grantf@ucar.edu> Co-authored-by: Man.Zhang <Man.Zhang@noaa.gov> Co-authored-by: Dom Heinzeller <dom.heinzeller@noaa.gov>
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Commits on Nov 9, 2020
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update cmeps, fix debug compile, rename nems.configure files for coup…
…led model (ufs-community#254) * Implements a bugfix for the mapping of ifrac for both nems_orig and nems_frac in CMEPS: issue (ufs-community#17)[NOAA-EMC/CMEPS#17] * Adds field-packing for performance improvements in CMEPS: issue (ufs-community#23)[NOAA-EMC/CMEPS#23] * Uses module file fv3_debug when DEBUG=Y is specified and fv3_debug is available * Shortens the nems.configure file name used with the coupled model
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Commits on Nov 13, 2020
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Changes to regression test files for recent changes to RRTMG and RRTM…
…GP. (ufs-community#262) * Changes to regression test files for recent changes to RRTMG and RRTMGP. * Removed redundant importing of kind_phys in physics * add units to index_for_diagnostic_printout metadata * Replace iovr_{lw,sw} with iovr for HWRF regression tests * Bugfix in GP sampling routines. * Increase number of nodes for test fv3_ccpp_gocart_clm on Cheyenne Co-authored-by: Dom Heinzeller <climbfuji@ymail.com>
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Commits on Nov 17, 2020
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Bring GFS.v16 features back to develop branch (ufs-community#274)
* bring GFS.v16 code changes back to develop branch * update upp lib in hera module * use test hpc stack lib * update upp lib in fv3 for cmake * update post control files * update upp lib in hpcstack on hera, orion and dell and in nceplibs on cray * add change in fv3 dycore ufs-community#35 * remove duplicate read_data in fms_mod in external_ic.F90 Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> Co-authored-by: Dom Heinzeller <climbfuji@ymail.com>
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Commits on Nov 18, 2020
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Merge branch 'develop' of https://github.com/ufs-community/ufs-weathe…
…r-model into gsd/develop
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Commits on Nov 19, 2020
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* If ufs.cpld.cpl.r.* files do not reproduce, try nccmp * Modify/add to run cpld 35d bmark tests * Fix nccmp implementation. Fix a bug for 35d tests * Use env var NCCMP * Add hera.intel to rt_35 and rt_wave_35d * Use which to find nccmp path. Apply nccmp to all files that fail cmp. Fix a bug in fv3_ccpp_wrtGauss_netcdf_parallel * Change compare method from nccmp to compare_ncfile.py * Netcdf compare changes on Hera; skip-ci * Netcdf compare changes on WCOSS Dell P3; skip-ci * Modify comopare_ncfile.py * Netcdf compare changes on wcoss cray * Implement Dusan's ecflow fix ufs-community#273 * Move miniconda3 to emc.nemspara on Hera and Orion. Minor change in default_vars.sh
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Merge branch 'develop' of https://github.com/ufs-community/ufs-weathe…
…r-model into update_gsd_develop_from_develop_20201118
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Commits on Nov 20, 2020
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