Merge pull request #252 from christinaholtNOAA/merge_develop_nov19

rrfs_ci: Merge in authoritative develop

jobs/JREGIONAL_GET_EXTRN_MDL_FILES

@@ -57,7 +57,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_GET_OBS_CCPA

@@ -39,7 +39,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_GET_OBS_MRMS

@@ -35,7 +35,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_GET_OBS_NDAS

@@ -35,7 +35,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_MAKE_GRID

@@ -125,7 +125,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_MAKE_ICS

@@ -27,7 +27,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_MAKE_LBCS

@@ -27,7 +27,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_MAKE_OROG

@@ -27,7 +27,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_MAKE_SFC_CLIMO

@@ -27,7 +27,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_RUN_FCST

@@ -37,7 +37,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #

jobs/JREGIONAL_RUN_POST

@@ -36,7 +36,7 @@
 #
 #-----------------------------------------------------------------------
 #
-scrfunc_fp=$( readlink -f "${BASH_SOURCE[0]}" )
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
 scrfunc_fn=$( basename "${scrfunc_fp}" )
 scrfunc_dir=$( dirname "${scrfunc_fp}" )
 #
@@ -113,7 +113,7 @@ cd_vrfy "${tmp_dir}"
 #
 #-----------------------------------------------------------------------
 #
-fhr=$( printf "%s" "${fhr}" | sed -n -r -e "s/^([0-9]+)$/\1/p" )
+fhr=$( printf "%s" "${fhr}" | $SED -n -r -e "s/^([0-9]+)$/\1/p" )
 if [ -z "$fhr" ]; then
   print_err_msg_exit "\
 The forecast hour (fhr) must be a non-empty string consisting of only 

jobs/JREGIONAL_RUN_VX_ENSGRID

@@ -0,0 +1,90 @@
+#!/bin/bash
+
+#
+#-----------------------------------------------------------------------
+#
+# This script runs METplus for ensemble-stat on the UPP output files by 
+# initialization time for all forecast hours for gridded analysis.
+#
+#-----------------------------------------------------------------------
+#
+
+#
+#-----------------------------------------------------------------------
+#
+# Source the variable definitions file and the bash utility functions.
+#
+#-----------------------------------------------------------------------
+#
+. ${GLOBAL_VAR_DEFNS_FP}
+. $USHDIR/source_util_funcs.sh
+#
+#-----------------------------------------------------------------------
+#
+# Save current shell options (in a global array).  Then set new options
+# for this script/function.
+#
+#-----------------------------------------------------------------------
+#
+{ save_shell_opts; set -u -x; } > /dev/null 2>&1
+#
+#-----------------------------------------------------------------------
+#
+# Get the full path to the file in which this script/function is located 
+# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
+# which the file is located (scrfunc_dir).
+#
+#-----------------------------------------------------------------------
+#
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
+scrfunc_fn=$( basename "${scrfunc_fp}" )
+scrfunc_dir=$( dirname "${scrfunc_fp}" )
+#
+#-----------------------------------------------------------------------
+#
+# Print message indicating entry into script.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Entering script:  \"${scrfunc_fn}\"
+In directory:     \"${scrfunc_dir}\"
+
+This is the J-job script for the task that runs METplus for ensemble-stat
+on gridded fields by initialization time for all forecast hours.
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Call the ex-script for this J-job and pass to it the necessary varia-
+# bles. 
+#
+#-----------------------------------------------------------------------
+#
+$SCRIPTSDIR/exregional_run_ensgridvx.sh \
+  cycle_dir="${CYCLE_DIR}" || \
+print_err_msg_exit "\
+Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
+#
+#-----------------------------------------------------------------------
+#
+# Print exit message.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Exiting script:  \"${scrfunc_fn}\"
+In directory:    \"${scrfunc_dir}\"
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Restore the shell options saved at the beginning of this script/func-
+# tion.
+#
+#-----------------------------------------------------------------------
+#
+{ restore_shell_opts; } > /dev/null 2>&1
+

jobs/JREGIONAL_RUN_VX_ENSGRID_MEAN

@@ -0,0 +1,90 @@
+#!/bin/bash
+
+#
+#-----------------------------------------------------------------------
+#
+# This script runs METplus for grid-stat on the UPP output files by 
+# initialization time for all forecast hours for gridded analysis.
+#
+#-----------------------------------------------------------------------
+#
+
+#
+#-----------------------------------------------------------------------
+#
+# Source the variable definitions file and the bash utility functions.
+#
+#-----------------------------------------------------------------------
+#
+. ${GLOBAL_VAR_DEFNS_FP}
+. $USHDIR/source_util_funcs.sh
+#
+#-----------------------------------------------------------------------
+#
+# Save current shell options (in a global array).  Then set new options
+# for this script/function.
+#
+#-----------------------------------------------------------------------
+#
+{ save_shell_opts; set -u -x; } > /dev/null 2>&1
+#
+#-----------------------------------------------------------------------
+#
+# Get the full path to the file in which this script/function is located 
+# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
+# which the file is located (scrfunc_dir).
+#
+#-----------------------------------------------------------------------
+#
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
+scrfunc_fn=$( basename "${scrfunc_fp}" )
+scrfunc_dir=$( dirname "${scrfunc_fp}" )
+#
+#-----------------------------------------------------------------------
+#
+# Print message indicating entry into script.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Entering script:  \"${scrfunc_fn}\"
+In directory:     \"${scrfunc_dir}\"
+
+This is the J-job script for the task that runs METplus for grid-stat
+on gridded fields by initialization time for all forecast hours.
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Call the ex-script for this J-job and pass to it the necessary varia-
+# bles. 
+#
+#-----------------------------------------------------------------------
+#
+$SCRIPTSDIR/exregional_run_ensgridvx_mean.sh \
+  cycle_dir="${CYCLE_DIR}" || \
+print_err_msg_exit "\
+Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
+#
+#-----------------------------------------------------------------------
+#
+# Print exit message.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Exiting script:  \"${scrfunc_fn}\"
+In directory:    \"${scrfunc_dir}\"
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Restore the shell options saved at the beginning of this script/func-
+# tion.
+#
+#-----------------------------------------------------------------------
+#
+{ restore_shell_opts; } > /dev/null 2>&1
+

jobs/JREGIONAL_RUN_VX_ENSGRID_PROB

@@ -0,0 +1,90 @@
+#!/bin/bash
+
+#
+#-----------------------------------------------------------------------
+#
+# This script runs METplus for grid-stat on the UPP output files by 
+# initialization time for all forecast hours for gridded analysis.
+#
+#-----------------------------------------------------------------------
+#
+
+#
+#-----------------------------------------------------------------------
+#
+# Source the variable definitions file and the bash utility functions.
+#
+#-----------------------------------------------------------------------
+#
+. ${GLOBAL_VAR_DEFNS_FP}
+. $USHDIR/source_util_funcs.sh
+#
+#-----------------------------------------------------------------------
+#
+# Save current shell options (in a global array).  Then set new options
+# for this script/function.
+#
+#-----------------------------------------------------------------------
+#
+{ save_shell_opts; set -u -x; } > /dev/null 2>&1
+#
+#-----------------------------------------------------------------------
+#
+# Get the full path to the file in which this script/function is located 
+# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
+# which the file is located (scrfunc_dir).
+#
+#-----------------------------------------------------------------------
+#
+scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
+scrfunc_fn=$( basename "${scrfunc_fp}" )
+scrfunc_dir=$( dirname "${scrfunc_fp}" )
+#
+#-----------------------------------------------------------------------
+#
+# Print message indicating entry into script.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Entering script:  \"${scrfunc_fn}\"
+In directory:     \"${scrfunc_dir}\"
+
+This is the J-job script for the task that runs METplus for grid-stat
+on gridded fields by initialization time for all forecast hours.
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Call the ex-script for this J-job and pass to it the necessary varia-
+# bles. 
+#
+#-----------------------------------------------------------------------
+#
+$SCRIPTSDIR/exregional_run_ensgridvx_prob.sh \
+  cycle_dir="${CYCLE_DIR}" || \
+print_err_msg_exit "\
+Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
+#
+#-----------------------------------------------------------------------
+#
+# Print exit message.
+#
+#-----------------------------------------------------------------------
+#
+print_info_msg "
+========================================================================
+Exiting script:  \"${scrfunc_fn}\"
+In directory:    \"${scrfunc_dir}\"
+========================================================================"
+#
+#-----------------------------------------------------------------------
+#
+# Restore the shell options saved at the beginning of this script/func-
+# tion.
+#
+#-----------------------------------------------------------------------
+#
+{ restore_shell_opts; } > /dev/null 2>&1
+