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Fix and Combine the existing refineDiag scripts #44

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Fix and Combine the existing refineDiag scripts #44

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nikizadehgfdl
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  • Put the corrected new data_stager refine_diag script under git and remove the old one (per Erik Mason)
  • Source the data_stager refine_diag script in the MOM6_refineDiag so that there is only 1 refineDiag script appearing in the CM4 xml to save the limited number of characters in ppEnv variable that has caused problems with pp

closes issue #12

@nikizadehgfdl
Merge branch 'dev/master' into user/nnz/fix_refineDiagScripts
891abbf 
Conflicts: Resolved
	tools/analysis/MOM6_refineDiag.csh
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This is not needed anymore due to the relocation of the data_stager script under xml/ dir (version control in MDT/xml project).
Please ignore this pull request.

@adcroft
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adcroft commented Aug 24, 2015

OK, I'll ignore it ... but how much trouble will it cause if I move tools/analysis/MOM6_refineDiag.csh into ice_ocean_SIS2/OM4_025/? I want to move anything that is experiment specific out of tools/analysis/ into the appropriate experiment directory so that we can add new experiments?

@nikizadehgfdl nikizadehgfdl deleted the user/nnz/fix_refineDiagScripts branch July 27, 2016 18:28
Hallberg-NOAA added a commit that referenced this pull request Apr 24, 2018
@Hallberg-NOAA
MOM6: Merged dev/ncar into dev/master
1091210 
  Merged an extensive set of changes from dev/ncar onto dev/master.  The list of
commits include:
 - NOAA-GFDL/MOM6@77a97ba Merge branch 'NCAR-dev/ncar' into dev/master
 - NOAA-GFDL/MOM6@8050958 Merge pull request #55 from gustavo-marques/deallocate_diabatic
 - NOAA-GFDL/MOM6@648f31b Replace cvmix with CVMix
 - NOAA-GFDL/MOM6@4b21263 Merge pull request #54 from gustavo-marques/deallocate_diabatic
 - NOAA-GFDL/MOM6@165a5eb Comment call diabatic_driver_end
 - NOAA-GFDL/MOM6@9f4ce3a Un-comment call diabatic_driver_end
 - NOAA-GFDL/MOM6@4671c07 Comment call diabatic_driver_end to check if Travis still fails
 - NOAA-GFDL/MOM6@e90fbe9 Return if CS is not associated
 - NOAA-GFDL/MOM6@65527d6 Set useKPP = .false. (default) and comment call to diag_grid_storage_end
 - NOAA-GFDL/MOM6@2800524 Uncomment calls to deallocate KPP related arrays
 - NOAA-GFDL/MOM6@dab30b6 Merge pull request #52 from alperaltuntas/initialize_tidal_ctrl_vars
 - NOAA-GFDL/MOM6@334f124 Merge remote-tracking branch 'gmarques/fix_travis_deallocation' into initialize_tidal_ctrl_vars
 - NOAA-GFDL/MOM6@5153869 initialize boolean control vars in tidal mixing mod
 - NOAA-GFDL/MOM6@43b7968 Commenting out call to diabatic_driver_end in MOM.F90
 - NOAA-GFDL/MOM6@dde5a59 Commenting out deallocation of KPP related arrays
 - NOAA-GFDL/MOM6@dc82c48 Return call if CS is not allocated
 - NOAA-GFDL/MOM6@dabe31b Update CVMix
 - NOAA-GFDL/MOM6@5640daf Attempt to fix deallocating unallocated arrays
 - NOAA-GFDL/MOM6@93eee52 Merge pull request #49 from gustavo-marques/update_cvmix
 - NOAA-GFDL/MOM6@d07120c Remove trailing space
 - NOAA-GFDL/MOM6@69bf4fa Updates CVMix
 - NOAA-GFDL/MOM6@5f19507 Merge pull request #48 from gustavo-marques/fix_cvmix_convection
 - NOAA-GFDL/MOM6@caf1d1e Fixes bug and renames variables
 - NOAA-GFDL/MOM6@869d32f Merge pull request #47 from alperaltuntas/introduce_cvmix_tidal
 - NOAA-GFDL/MOM6@01578c5 fix tidal_mixing_init return
 - NOAA-GFDL/MOM6@86e7074 Merge pull request #46 from alperaltuntas/introduce_cvmix_tidal
 - NOAA-GFDL/MOM6@bf322c8 add tidal mixing-specific prandtl number
 - NOAA-GFDL/MOM6@81a5ef8 Merged with latest master
 - NOAA-GFDL/MOM6@696462c MOM_tidal_mixing. cleaanup
 - NOAA-GFDL/MOM6@3e7cab8 debug calculate_cvmix_tidal
 - NOAA-GFDL/MOM6@78bb40c Merge pull request #44 from NCAR/adding_cvmix
 - NOAA-GFDL/MOM6@4dde603 Avoided a possible seg. fault in set_diffusivity_end
 - NOAA-GFDL/MOM6@36f7a06 Changed kv to a pointer since it might not always be associated
 - NOAA-GFDL/MOM6@0ce9980 By pass reading BULKMIXEDLAYER via get_param
 - NOAA-GFDL/MOM6@1218973 Raname variables Kd -> kd_lay; visc%Kv_slow - > kv
 - NOAA-GFDL/MOM6@ea813b8 add tidal diagnostics for cvmix
 - NOAA-GFDL/MOM6@648018e Rename kv_conv -> kv_conv_const; kd_conv -> kd_conv_const
 - NOAA-GFDL/MOM6@c1acec8 Add vertical background viscosity into visc%Kv_slow
 - NOAA-GFDL/MOM6@a2498a1 Changed name in register_diag_field kd_shear -> kd_shear_cvmix; kv_shear -> kv_shear_cvmix
 - NOAA-GFDL/MOM6@37ca38f Renamed kd_bkgnd_3d -> kd_bkgnd; kv_bkgnd_3d -> kv_bkgnd
 - NOAA-GFDL/MOM6@105094f Add viscosities due to convection into visc%Kv_slow
 - NOAA-GFDL/MOM6@e544290 Allocated/deallocate visc%Kv_slow
 - NOAA-GFDL/MOM6@801a86a Added variable Kv_slow in visc type
 - NOAA-GFDL/MOM6@8977888 Move tidal diagnostics to MOM_tidal_mixing module
 - NOAA-GFDL/MOM6@2430f6e correct tidal energy file dir
 - NOAA-GFDL/MOM6@a3155d6 Add tidal parameter consistency checks.
 - NOAA-GFDL/MOM6@80c33a4 Replaced Kv_turb -> Kv_shear
 - NOAA-GFDL/MOM6@644f200 Replaced Kv_turb -> Kv_shear
 - NOAA-GFDL/MOM6@6a2e864 Replaced Kd_turb -> Kd_shear and Kv_turb -> Kv_shear
 - NOAA-GFDL/MOM6@7376f49 update Kd
 - NOAA-GFDL/MOM6@69ab998 Added a unique Prandtl # for convection and background
 - NOAA-GFDL/MOM6@4cac1e1 Renamed variables (KH to kd; KM to kv) and added diagnostics
 - NOAA-GFDL/MOM6@e992292 Added calculate_cvmix_tidal interface
 - NOAA-GFDL/MOM6@2c451c8 Merge pull request #43 from alperaltuntas/dev/ncar
 - NOAA-GFDL/MOM6@d1cee89 Add timestep initializations to calculate_cvmix_tidal
 - NOAA-GFDL/MOM6@7a81871 Re-structured MOM_bkgnd_mixing
 - NOAA-GFDL/MOM6@3fcdb4c Update to new CVMix tag with tidal mixing changes
 - NOAA-GFDL/MOM6@f361002 Read in tidal energy dissipation
 - NOAA-GFDL/MOM6@4e8dd5a Added a if statement to check if Int_tide_dissipation and Bryan_Lewis are used at the same time.
 - NOAA-GFDL/MOM6@8ef5a1b Renamed Bryan&Lewis coeffs and added a 3D array for depth
 - NOAA-GFDL/MOM6@08db85c Deleted code that has been moved to MOM_bkgnd_mixing.F90
 - NOAA-GFDL/MOM6@1be0248 Added first version of MOM_bkgnd_mixing
 - NOAA-GFDL/MOM6@1116f49 Fixed a problem in cvmix_init_bkgnd_BryanLewis_low
 - NOAA-GFDL/MOM6@83089ff Updated CVMix
 - NOAA-GFDL/MOM6@a101e49 Reduced the numbers of characters in a line
 - NOAA-GFDL/MOM6@53004ec Deleted module MOM_diffConvection
 - NOAA-GFDL/MOM6@0bb899a uncomment cvmix_init_tidal
 - NOAA-GFDL/MOM6@22902de Mv add_int_tide_diffusivity to tidal_mixing module
 - NOAA-GFDL/MOM6@c34ab63 Move diags back from MOM_tidal_mixing to MOM_set_diffusivity (for now)
 - NOAA-GFDL/MOM6@76546aa Move tidal mixing initialization to MOM_tidal_mixing
 - NOAA-GFDL/MOM6@95406ff Rename MOM_cvmix_tidal module as MOM_tidal_mixing (for now)
 - NOAA-GFDL/MOM6@c2dea88 update diabatic driver for MOM_cvmix_tidal module
 - NOAA-GFDL/MOM6@bb7917a comment out call ocn_domain_mct to avoid uninitialized vars for now. more comprehensive cleanup is to come.
 - NOAA-GFDL/MOM6@941bfb6 Updated mixing coeff. due to convection
 - NOAA-GFDL/MOM6@ba2a0a4 Added function cvmix_conv_is_used and register restart fields.
 - NOAA-GFDL/MOM6@c78ac9a Add the new module MOM_cvmix_tidal
 - NOAA-GFDL/MOM6@1d850a6 Changed hbl to an optional pointer; do not apply mixing due to convection within the boundary layer
 - NOAA-GFDL/MOM6@afd8f59 Fixed a bug in the deallocate call
 - NOAA-GFDL/MOM6@a77d114 Fixed a bug in the deallocate call
 - NOAA-GFDL/MOM6@f12702c Dealocate memory via cvmix_shear_end and changed some var names to snake_case convention
 - NOAA-GFDL/MOM6@a209b7a Added a call to diabatic_driver_end
 - NOAA-GFDL/MOM6@e84f706 Fix array allocattion/dealocation
 - NOAA-GFDL/MOM6@7f6d8f1 Added call to KPP_get_BLD
 - NOAA-GFDL/MOM6@fc00e77 Added function to copy KPP surface boundary layer depth into BLD
 - NOAA-GFDL/MOM6@c99e94b Updates visc%Kd_turb and visc%Kv_turb after convection is applied
 - NOAA-GFDL/MOM6@97152b1 Adding first version of convection calls via CVMix
 - NOAA-GFDL/MOM6@dca5736 Add comments for adding additonal CVMix components and clean module
 - NOAA-GFDL/MOM6@c6327d6 Copy OBLdepth from KPP into visc%MLD and Hml
 - NOAA-GFDL/MOM6@71ff26b Changed multi-word names from camelCase to snake_case
 - NOAA-GFDL/MOM6@8095e8f Merge pull request #42 from gustavo-marques/merge-dev-master-2018-02-28
 - NOAA-GFDL/MOM6@bd80a20 Merge branch 'dev/master' into merge-dev-master-2018-02-28
 - NOAA-GFDL/MOM6@2f79ffc Merge pull request #41 from gustavo-marques/merge_dev_master_20feb2018
Hallberg-NOAA added a commit that referenced this pull request Apr 25, 2018
@Hallberg-NOAA
MOM6: Merged dev/ncar & dev/master into dev/gfdl
c903983 
  Merged an extensive set of changes from dev/ncar onto dev/master, and then
from dev/master into dev/gfdl.  The list of commits include:
 - NOAA-GFDL/MOM6@3c70582 Merge branch 'dev/master' into dev/gfdl
 - NOAA-GFDL/MOM6@77a97ba Merge branch 'NCAR-dev/ncar' into dev/master
 - NOAA-GFDL/MOM6@8050958 Merge pull request #55 from gustavo-marques/deallocate_diabatic
 - NOAA-GFDL/MOM6@648f31b Replace cvmix with CVMix
 - NOAA-GFDL/MOM6@4b21263 Merge pull request #54 from gustavo-marques/deallocate_diabatic
 - NOAA-GFDL/MOM6@165a5eb Comment call diabatic_driver_end
 - NOAA-GFDL/MOM6@9f4ce3a Un-comment call diabatic_driver_end
 - NOAA-GFDL/MOM6@4671c07 Comment call diabatic_driver_end to check if Travis still fails
 - NOAA-GFDL/MOM6@e90fbe9 Return if CS is not associated
 - NOAA-GFDL/MOM6@65527d6 Set useKPP = .false. (default) and comment call to diag_grid_storage_end
 - NOAA-GFDL/MOM6@2800524 Uncomment calls to deallocate KPP related arrays
 - NOAA-GFDL/MOM6@dab30b6 Merge pull request #52 from alperaltuntas/initialize_tidal_ctrl_vars
 - NOAA-GFDL/MOM6@334f124 Merge remote-tracking branch 'gmarques/fix_travis_deallocation' into initialize_tidal_ctrl_vars
 - NOAA-GFDL/MOM6@5153869 initialize boolean control vars in tidal mixing mod
 - NOAA-GFDL/MOM6@43b7968 Commenting out call to diabatic_driver_end in MOM.F90
 - NOAA-GFDL/MOM6@dde5a59 Commenting out deallocation of KPP related arrays
 - NOAA-GFDL/MOM6@dc82c48 Return call if CS is not allocated
 - NOAA-GFDL/MOM6@dabe31b Update CVMix
 - NOAA-GFDL/MOM6@5640daf Attempt to fix deallocating unallocated arrays
 - NOAA-GFDL/MOM6@93eee52 Merge pull request #49 from gustavo-marques/update_cvmix
 - NOAA-GFDL/MOM6@d07120c Remove trailing space
 - NOAA-GFDL/MOM6@69bf4fa Updates CVMix
 - NOAA-GFDL/MOM6@5f19507 Merge pull request #48 from gustavo-marques/fix_cvmix_convection
 - NOAA-GFDL/MOM6@caf1d1e Fixes bug and renames variables
 - NOAA-GFDL/MOM6@869d32f Merge pull request #47 from alperaltuntas/introduce_cvmix_tidal
 - NOAA-GFDL/MOM6@01578c5 fix tidal_mixing_init return
 - NOAA-GFDL/MOM6@86e7074 Merge pull request #46 from alperaltuntas/introduce_cvmix_tidal
 - NOAA-GFDL/MOM6@bf322c8 add tidal mixing-specific prandtl number
 - NOAA-GFDL/MOM6@81a5ef8 Merged with latest master
 - NOAA-GFDL/MOM6@696462c MOM_tidal_mixing. cleaanup
 - NOAA-GFDL/MOM6@3e7cab8 debug calculate_cvmix_tidal
 - NOAA-GFDL/MOM6@78bb40c Merge pull request #44 from NCAR/adding_cvmix
 - NOAA-GFDL/MOM6@4dde603 Avoided a possible seg. fault in set_diffusivity_end
 - NOAA-GFDL/MOM6@36f7a06 Changed kv to a pointer since it might not always be associated
 - NOAA-GFDL/MOM6@0ce9980 By pass reading BULKMIXEDLAYER via get_param
 - NOAA-GFDL/MOM6@1218973 Raname variables Kd -> kd_lay; visc%Kv_slow - > kv
 - NOAA-GFDL/MOM6@ea813b8 add tidal diagnostics for cvmix
 - NOAA-GFDL/MOM6@648018e Rename kv_conv -> kv_conv_const; kd_conv -> kd_conv_const
 - NOAA-GFDL/MOM6@c1acec8 Add vertical background viscosity into visc%Kv_slow
 - NOAA-GFDL/MOM6@a2498a1 Changed name in register_diag_field kd_shear -> kd_shear_cvmix; kv_shear -> kv_shear_cvmix
 - NOAA-GFDL/MOM6@37ca38f Renamed kd_bkgnd_3d -> kd_bkgnd; kv_bkgnd_3d -> kv_bkgnd
 - NOAA-GFDL/MOM6@105094f Add viscosities due to convection into visc%Kv_slow
 - NOAA-GFDL/MOM6@e544290 Allocated/deallocate visc%Kv_slow
 - NOAA-GFDL/MOM6@801a86a Added variable Kv_slow in visc type
 - NOAA-GFDL/MOM6@8977888 Move tidal diagnostics to MOM_tidal_mixing module
 - NOAA-GFDL/MOM6@2430f6e correct tidal energy file dir
 - NOAA-GFDL/MOM6@a3155d6 Add tidal parameter consistency checks.
 - NOAA-GFDL/MOM6@80c33a4 Replaced Kv_turb -> Kv_shear
 - NOAA-GFDL/MOM6@644f200 Replaced Kv_turb -> Kv_shear
 - NOAA-GFDL/MOM6@6a2e864 Replaced Kd_turb -> Kd_shear and Kv_turb -> Kv_shear
 - NOAA-GFDL/MOM6@7376f49 update Kd
 - NOAA-GFDL/MOM6@69ab998 Added a unique Prandtl # for convection and background
 - NOAA-GFDL/MOM6@4cac1e1 Renamed variables (KH to kd; KM to kv) and added diagnostics
 - NOAA-GFDL/MOM6@e992292 Added calculate_cvmix_tidal interface
 - NOAA-GFDL/MOM6@2c451c8 Merge pull request #43 from alperaltuntas/dev/ncar
 - NOAA-GFDL/MOM6@d1cee89 Add timestep initializations to calculate_cvmix_tidal
 - NOAA-GFDL/MOM6@7a81871 Re-structured MOM_bkgnd_mixing
 - NOAA-GFDL/MOM6@3fcdb4c Update to new CVMix tag with tidal mixing changes
 - NOAA-GFDL/MOM6@f361002 Read in tidal energy dissipation
 - NOAA-GFDL/MOM6@4e8dd5a Added a if statement to check if Int_tide_dissipation and Bryan_Lewis are used at the same time.
 - NOAA-GFDL/MOM6@8ef5a1b Renamed Bryan&Lewis coeffs and added a 3D array for depth
 - NOAA-GFDL/MOM6@08db85c Deleted code that has been moved to MOM_bkgnd_mixing.F90
 - NOAA-GFDL/MOM6@1be0248 Added first version of MOM_bkgnd_mixing
 - NOAA-GFDL/MOM6@1116f49 Fixed a problem in cvmix_init_bkgnd_BryanLewis_low
 - NOAA-GFDL/MOM6@83089ff Updated CVMix
 - NOAA-GFDL/MOM6@a101e49 Reduced the numbers of characters in a line
 - NOAA-GFDL/MOM6@53004ec Deleted module MOM_diffConvection
 - NOAA-GFDL/MOM6@0bb899a uncomment cvmix_init_tidal
 - NOAA-GFDL/MOM6@22902de Mv add_int_tide_diffusivity to tidal_mixing module
 - NOAA-GFDL/MOM6@c34ab63 Move diags back from MOM_tidal_mixing to MOM_set_diffusivity (for now)
 - NOAA-GFDL/MOM6@76546aa Move tidal mixing initialization to MOM_tidal_mixing
 - NOAA-GFDL/MOM6@95406ff Rename MOM_cvmix_tidal module as MOM_tidal_mixing (for now)
 - NOAA-GFDL/MOM6@c2dea88 update diabatic driver for MOM_cvmix_tidal module
 - NOAA-GFDL/MOM6@bb7917a comment out call ocn_domain_mct to avoid uninitialized vars for now. more comprehensive cleanup is to come.
 - NOAA-GFDL/MOM6@941bfb6 Updated mixing coeff. due to convection
 - NOAA-GFDL/MOM6@ba2a0a4 Added function cvmix_conv_is_used and register restart fields.
 - NOAA-GFDL/MOM6@c78ac9a Add the new module MOM_cvmix_tidal
 - NOAA-GFDL/MOM6@1d850a6 Changed hbl to an optional pointer; do not apply mixing due to convection within the boundary layer
 - NOAA-GFDL/MOM6@afd8f59 Fixed a bug in the deallocate call
 - NOAA-GFDL/MOM6@a77d114 Fixed a bug in the deallocate call
 - NOAA-GFDL/MOM6@f12702c Dealocate memory via cvmix_shear_end and changed some var names to snake_case convention
 - NOAA-GFDL/MOM6@a209b7a Added a call to diabatic_driver_end
 - NOAA-GFDL/MOM6@e84f706 Fix array allocattion/dealocation
 - NOAA-GFDL/MOM6@7f6d8f1 Added call to KPP_get_BLD
 - NOAA-GFDL/MOM6@fc00e77 Added function to copy KPP surface boundary layer depth into BLD
 - NOAA-GFDL/MOM6@c99e94b Updates visc%Kd_turb and visc%Kv_turb after convection is applied
 - NOAA-GFDL/MOM6@97152b1 Adding first version of convection calls via CVMix
 - NOAA-GFDL/MOM6@dca5736 Add comments for adding additonal CVMix components and clean module
 - NOAA-GFDL/MOM6@c6327d6 Copy OBLdepth from KPP into visc%MLD and Hml
 - NOAA-GFDL/MOM6@71ff26b Changed multi-word names from camelCase to snake_case
 - NOAA-GFDL/MOM6@8095e8f Merge pull request #42 from gustavo-marques/merge-dev-master-2018-02-28
 - NOAA-GFDL/MOM6@bd80a20 Merge branch 'dev/master' into merge-dev-master-2018-02-28
 - NOAA-GFDL/MOM6@2f79ffc Merge pull request #41 from gustavo-marques/merge_dev_master_20feb2018
marshallward added a commit that referenced this pull request Apr 14, 2021
@marshallward
MOM6: Merge pull request #1370 from Hallberg-NOAA/F_case_file_output
6354d81 
- NOAA-GFDL/MOM6@fc75e0fa4 Merge pull request #1370 from Hallberg-NOAA/F_case_file_output
- NOAA-GFDL/MOM6@e8e8abab9 Merge remote-tracking branch 'hallberg/F_case_file_output' into F_case_file_output
- NOAA-GFDL/MOM6@96f1d1e89 Use allocatable types in write_ocean_geometry_files
- NOAA-GFDL/MOM6@983824a69 Merge branch 'dev/gfdl' into F_case_file_output
- NOAA-GFDL/MOM6@5fe51b18e Merge pull request #1369 from Hallberg-NOAA/SIS2_IO_upgrades
- NOAA-GFDL/MOM6@0eb47b25a +More consistent treatment of input_filename = 'F'
- NOAA-GFDL/MOM6@03b997b88 +Enhanced support for novel axes in MOM_io
- NOAA-GFDL/MOM6@7ec08cd9b Merge pull request #1365 from marshallward/corad_vec_v2
- NOAA-GFDL/MOM6@dc66dd8a7 Merge branch 'dev/gfdl' into corad_vec_v2
- NOAA-GFDL/MOM6@c5c74419d Merge pull request #1364 from jkrasting/downsampled_diag_fix
- NOAA-GFDL/MOM6@a5fb36503 Merge branch 'dev/gfdl' into downsampled_diag_fix
- NOAA-GFDL/MOM6@d485a5123 Merge pull request #1363 from Hallberg-NOAA/SIS2_infra_support
- NOAA-GFDL/MOM6@b413f25c5 Merge branch 'SIS2_infra_support' of github.com:Hallberg-NOAA/MOM6 into SIS2_infra_support
- NOAA-GFDL/MOM6@358da7cc4 Corrected comments describing CT_copy_data
- NOAA-GFDL/MOM6@ad0bc3c41 Merge branch 'dev/gfdl' into SIS2_infra_support
- NOAA-GFDL/MOM6@fae570d0a Merge branch 'main' into main_to_gfdl
- NOAA-GFDL/MOM6@5f063044c Fixed downsampling summation for more diag types
- NOAA-GFDL/MOM6@c549ae9d9 Merge pull request #1358 from NOAA-GFDL/dev-gfdl-main-candidate-2021-03-26
- NOAA-GFDL/MOM6@ad372fdc2 Merge branch 'dev/gfdl' into SIS2_infra_support
- NOAA-GFDL/MOM6@d1dc6b5ba Coriolis: Improved coradcalc vectorization
- NOAA-GFDL/MOM6@2b6d3e115 Merge pull request #1362 from marshallward/horvisc_diag_to_stack
- NOAA-GFDL/MOM6@9792b2346 Fixed downsampling for x:sum y:point z:point diags
- NOAA-GFDL/MOM6@665cd9a3b Merge branch 'dev/gfdl' into horvisc_diag_to_stack
- NOAA-GFDL/MOM6@b6c7fdb02 change default value of use_mommesh as true
- NOAA-GFDL/MOM6@6d4a48390 Merge pull request #1360 from Hallberg-NOAA/fewer_timelevels
- NOAA-GFDL/MOM6@3c1cb2efd +Add MOM_domains interfaces needed by SIS2
- NOAA-GFDL/MOM6@cfa59aab1 +Add coupler_types interfaces needed by SIS2
- NOAA-GFDL/MOM6@97f111779 Merge branch 'dev/gfdl' into fewer_timelevels
- NOAA-GFDL/MOM6@813fc7975 Merge pull request #1359 from Hallberg-NOAA/FMS2_io_writes
- NOAA-GFDL/MOM6@2ffea27be MOM_hor_visc: Variables moved to stack
- NOAA-GFDL/MOM6@4fd380747 Merge branch 'dev/gfdl' into FMS2_io_writes
- NOAA-GFDL/MOM6@c62d51f9d Remove inappropriate timelevel arguments
- NOAA-GFDL/MOM6@13f1e70f5 Merge pull request #1356 from GEOS-ESM/bugfix/sanAkel/output-b-grid-currents
- NOAA-GFDL/MOM6@6c2b944e2 Merge branch 'dev/gfdl' into bugfix/sanAkel/output-b-grid-currents
- NOAA-GFDL/MOM6@67b03e324 Merge pull request #1353 from Hallberg-NOAA/less_checksums
- NOAA-GFDL/MOM6@5669d4360 Merge branch 'dev/gfdl' into less_checksums
- NOAA-GFDL/MOM6@b044be8ee Merge branch 'dev/gfdl' into FMS2_io_writes
- NOAA-GFDL/MOM6@fe9b2a106 Merge pull request #1352 from Hallberg-NOAA/FMS2_io
- NOAA-GFDL/MOM6@f6105cb22 Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@95ad9372b Fix distributed reads of checksums using FMS2_io
- NOAA-GFDL/MOM6@81c48cbf6 Merge pull request #5 from marshallward/FMS2_io_writes
- NOAA-GFDL/MOM6@ba643bde2 Explicit domain decomposition of horizontal axes
- NOAA-GFDL/MOM6@7bdecbc62 Add missing ".nc" to FMS2 output filenames
- NOAA-GFDL/MOM6@fad7e0d4a Merge branch 'dev/gfdl' into bugfix/sanAkel/output-b-grid-currents
- NOAA-GFDL/MOM6@17afc2b5e A call to pass_vector(...) is needed to correctly do a halo exchange before getting currents in A- or B-grid staggering. Now added.
- NOAA-GFDL/MOM6@3fe07d4c6 +Move FMS2 read helper routines into MOM_io_infra
- NOAA-GFDL/MOM6@2579d0771 Merge pull request #4 from gustavo-marques/less_checksums_mct_nuopc
- NOAA-GFDL/MOM6@66ac81057 Only write checksums from root PE MCT/NUOPC caps
- NOAA-GFDL/MOM6@84d5e2176 +FMS2 reads for ints & MOM_read_data_fms2 cleanup
- NOAA-GFDL/MOM6@4843c6c4d Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@03e174e14 Removed FMS2 MOM_axis and MOM_write_field_fms2
- NOAA-GFDL/MOM6@255233ba3 Added code to write via FMS2 interfaces
- NOAA-GFDL/MOM6@0fdc5c438 Correct warnings from categorize_axis
- NOAA-GFDL/MOM6@f89ddeaa8 +Add edge_axis argument to write_metadata_axis
- NOAA-GFDL/MOM6@ee0152f26 +Separate MOM_interp_infra axistype from MOM_io
- NOAA-GFDL/MOM6@09173f7dc Only write checksums from root PE for FMS_cap
- NOAA-GFDL/MOM6@30b057116 Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@91232095d Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@aab2ad645 +Add ability to read fields via FMS2 interfaces
- NOAA-GFDL/MOM6@23a78d2f6 Clean up in MOM_restart.F90
- NOAA-GFDL/MOM6@c68fedfea +Change arguments to MOM_register_variable_axes
- NOAA-GFDL/MOM6@0ba1aa53e +Simplified read_data_fms2 and write_field_fms2
- NOAA-GFDL/MOM6@f2459ec21 Merge branch 'user/jml/add_fms2io_to_MOM_restart' of https://github.com/wrongkindofdoctor/MOM6 into FMS2_io
- NOAA-GFDL/MOM6@a07757314 Explicitly set (1x1) io_domain as a default
- NOAA-GFDL/MOM6@d4531ca37 Duplicated infra/FMS1 into infra/FMS2
- NOAA-GFDL/MOM6@f806579bc Correct module use statements in infra/FMS1
- NOAA-GFDL/MOM6@2e46ea6d7 removed errant .true. in save_restart call
- NOAA-GFDL/MOM6@809b3ac52 added local logical variables to save restart wrapper that are set using the use_fms2 and write_ic flags if present to avoid invalid memory reference error added str_len argument to register_variable_attribute calls
- NOAA-GFDL/MOM6@a74c7eaba changed FMS release to 2020.03-beta1
- NOAA-GFDL/MOM6@5c2daa5da converted save_restart and restore_state to interface that call versions of the routines with the fms-io or fms2-io interfaces added module use statments for fms2_io and MOM_io helper routines to MOM_restart added use_fms2=.true. arguments to save_restart and restore_state calls added write_ic=.true. to the save_restart call in MOM.F90
- NOAA-GFDL/MOM6@40047fa50 Merge pull request #66 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@c8695c621 Merge pull request #65 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@0cf3cb9c9 Merge pull request #64 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@de7f95a57 Merge pull request #63 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@50c353935 Merge pull request #62 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@cbdcf8a52 Create hola_tierra.yml
- NOAA-GFDL/MOM6@763b17650 Merge pull request #61 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@ff3412651 Merge pull request #60 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@cea55fec4 Merge pull request #59 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b8eee455f Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6 into dev/gfdl
- NOAA-GFDL/MOM6@46b8f0fd5 Merge pull request #58 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@ff1a27f59 Merge pull request #57 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@496617cb1 Merge pull request #56 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@e9281f40e Merge pull request #55 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@4a5613400 Merge pull request #54 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@86c2a7dfa Merge pull request #53 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@c24535733 Merge pull request #52 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@8d7be6866 Merge pull request #51 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@7adcc9037 Merge pull request #50 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@aff2a13ab Merge pull request #49 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@477d9f85d Merge pull request #48 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@cee0a2166 Merge pull request #47 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@12dccaf8a Merge pull request #46 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@7dbca83ff Merge pull request #44 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@162ca970b Merge pull request #43 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@abaf004cb Merge pull request #42 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@075ab81e5 Merge pull request #41 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@e072bc7cc Merge in latest dev/gfdl updates (#40)
- NOAA-GFDL/MOM6@cae4cfd05 Merge branch 'dev/gfdl' of github.com:wrongkindofdoctor/MOM6 into dev/gfdl
- NOAA-GFDL/MOM6@ece60c11e Merge branch 'NOAA-GFDL-dev/gfdl' into dev/gfdl
- NOAA-GFDL/MOM6@3e27e4793 Merge branch 'dev/gfdl' of git://github.com/NOAA-GFDL/MOM6 into NOAA-GFDL-dev/gfdl
- NOAA-GFDL/MOM6@59109032e Merge pull request #38 from wrongkindofdoctor/revert-37-dev/gfdl
- NOAA-GFDL/MOM6@3c15a0c11 Revert "Merge in dev/gfdl updates (#37)"
- NOAA-GFDL/MOM6@855d7069d Merge in dev/gfdl updates (#37)
- NOAA-GFDL/MOM6@2c32568b7 merge in latest dev/gfdl updates (#36)
- NOAA-GFDL/MOM6@09bcebcfe Merge pull request #35 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@124a071e4 Merge pull request #33 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a427676bd Merge pull request #32 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@0b874f32c Merge pull request #31 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a5386da98 Merge pull request #30 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@5b2852cde Merge pull request #28 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@22c586562 Merge pull request #27 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@f9b5a7fca Merge pull request #26 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@577208343 Merge pull request #25 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@5589d8cc3 Merge pull request #24 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@aa11e1f66 Merge pull request #23 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b5e5c48a6 Merge pull request #22 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@911d0a240 Merge pull request #21 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@601eb679c Merge pull request #20 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b4fd53be9 Merge pull request #19 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@f6879f425 Merge pull request #18 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@139ab1fc0 Merge pull request #17 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a0c80dcf3 Merge pull request #16 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@42cca4f46 Merge pull request #15 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a1c556b7f Merge pull request #14 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@f5bc54b67 Merge pull request #13 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@6ffc8976f Merge pull request #12 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@30d35a3c6 Merge pull request #11 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@1304880fb Merge pull request #10 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@522069b31 Merge pull request #9 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@1bbc8de13 Merge pull request #8 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@9aa2aaeb1 Merge pull request #7 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b7f50fcbf Merge remote-tracking branch 'GFDL_MOM6/dev/gfdl' into dev/gfdl merge in latest MOM updates * GFDL_MOM6/dev/gfdl: (220 commits)   Update cache dir for /lustre/f2   Update cache dir for /lustre/f2   Calculate height-related diagnostics in Z   Set coord_adapt and coord_slight parameters in H   Corrected comments in build_zlike_column   +Pass max_depth to initialize_regridding in Z   Corrected comments in build_sigma_column   Combined scaling factors in build_adapt_column   Clarified comments in Idealized_Hurricane   +Recast MOM_diag_to_Z to work in units of Z   +Recast MOM_ALE_sponge to work in units of Z   +Added m_to_Z arg to horiz_interp_and_extrap_tracer   Find energetic_PBL column height changes in Z   +Find diapyc_energy_req column height changes in Z   Use local variables to rescale in MOM_Point_Accel   Recast MOM_sum_output to work in units of Z   Simplify MOM_diagnostics code   +Rescale depth inside of MEKE_lengthScales_0d   +Add conversion argument to register_static_field   Rescale values reported by PointAccel   ...
- NOAA-GFDL/MOM6@975262dc9 Merge pull request #5 from NOAA-GFDL/dev/gfdl
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