Monthly SST analysis script #120
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Updated fork with commits from NOAA-GFDL/MOM6-examples
marshallward
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Nov 7, 2019
This patch updates the repository to point to the updated dev/master source, including NCAR's 2019/10/02 update. Parameter changes: - Removed: ADD_KV_SLOW - Added: MEKE_EQUILIBRIUM_ALT Diagnostic changes: - Removed: FrictWork_diss A seaice.stats file that had been added to Baltic_OM4_025 has also been removed. - NOAA-GFDL/MOM6@ec31391 Merge pull request #1013 from gustavo-marques/dev-master-candidate-ncar-2019-10-02 - NOAA-GFDL/MOM6@bccdf19 Restored comments documenting the dimensional rescaling of variables - NOAA-GFDL/MOM6@be86d57 Merge branch 'dev/master' into dev-master-candidate-ncar-2019-10-02 - NOAA-GFDL/MOM6@3b957a7 Merge pull request NOAA-GFDL#126 from alperaltuntas/create_ncar_fork_of_doxygen - NOAA-GFDL/MOM6@8648351 correct runoff units - NOAA-GFDL/MOM6@de0777d fix import/export field tables - NOAA-GFDL/MOM6@900ad92 fix subroutine table - NOAA-GFDL/MOM6@51a179a Merge branch 'dev/ncar' into create_ncar_fork_of_doxygen - NOAA-GFDL/MOM6@3260a30 Merge branch 'dev/ncar' of https://github.com/NCAR/MOM6 into dev/ncar - NOAA-GFDL/MOM6@0369959 Merge branch 'dev/ncar' into create_ncar_fork_of_doxygen - NOAA-GFDL/MOM6@d8a3886 Merge pull request NOAA-GFDL#125 from NCAR/rsdunlapiv/cap_doc_fix - NOAA-GFDL/MOM6@d1b0322 Move doxygen to end of module to be consistent with MOM6 conventions - NOAA-GFDL/MOM6@7dc0fd0 Fix the NUOPC cap doxygen to use HTML style formatting for the import/export field tables - NOAA-GFDL/MOM6@2bd130f Merge pull request NOAA-GFDL#124 from alperaltuntas/create_ncar_fork_of_doxygen - NOAA-GFDL/MOM6@521c732 set EXTRACT_ALL to generate call graphs - NOAA-GFDL/MOM6@26c376c move ncar files to ncar/ dir - NOAA-GFDL/MOM6@0b7f600 designate /mom_cap.F90 doxygen as subpage - NOAA-GFDL/MOM6@e44474c changes for API page generation - NOAA-GFDL/MOM6@ed59be3 Merge pull request NOAA-GFDL#6 from alperaltuntas/create_ncar_fork_of_doxygen - NOAA-GFDL/MOM6@e18a5b4 rm empty line - NOAA-GFDL/MOM6@3513c68 Merge pull request NOAA-GFDL#123 from alperaltuntas/create_ncar_fork_of_doxygen - NOAA-GFDL/MOM6@46d4385 use Doxyfile_ncar_rtd if env var NCAR_FORK defined - NOAA-GFDL/MOM6@c295ce1 add ncar version of Doxyfile - NOAA-GFDL/MOM6@353cea1 remove unused modules - NOAA-GFDL/MOM6@6eeeea5 Merge pull request NOAA-GFDL#122 from gustavo-marques/merge-dev-master-candidate-2019-08-30 - NOAA-GFDL/MOM6@992e826 Avoids posting Kv_slow when it is not initialized - NOAA-GFDL/MOM6@ba2f186 Removed diagnostics related to FrictWork_diss and FrictWork_Max - NOAA-GFDL/MOM6@fda9848 Merge pull request NOAA-GFDL#5 from NCAR/dev/ncar - NOAA-GFDL/MOM6@1852356 Removes white space - NOAA-GFDL/MOM6@4d0e180 Merge branch 'dev/ncar' into merge-dev-master-candidate-2019-08-30 - NOAA-GFDL/MOM6@69ee7bc Merge pull request NOAA-GFDL#121 from gustavo-marques/fix_MEKE_GM_src - NOAA-GFDL/MOM6@466903b Deletes more whitespace - NOAA-GFDL/MOM6@584177f Deletes whitespace - NOAA-GFDL/MOM6@fe44289 Fixes a bug when computing PE_release_h - NOAA-GFDL/MOM6@25b409b Adding back 2018_answers and cleanning the code - NOAA-GFDL/MOM6@ab9bc8a Adds OS%US as argument in add_shelf_forces - NOAA-GFDL/MOM6@15a03c5 Commented out variables left over from merge - NOAA-GFDL/MOM6@cfe0e70 Merge branch 'dev/ncar' into merge-dev-master-candidate-2019-08-30 - NOAA-GFDL/MOM6@38be24e Merge pull request NOAA-GFDL#120 from gustavo-marques/fix_gme - NOAA-GFDL/MOM6@b810e26 Fixes line length exceeded - NOAA-GFDL/MOM6@d329136 Merge pull request NOAA-GFDL#119 from NCAR/improve_consistency_check - NOAA-GFDL/MOM6@7f7e8c0 Add EPS_OMESH value in error message - NOAA-GFDL/MOM6@e02b358 compare mod 360 of diff and eps - NOAA-GFDL/MOM6@d9a00d7 call MOM_error if mesh is inconsistent - NOAA-GFDL/MOM6@c698b1a call get_eps_omesh and remove hardcoded limit - NOAA-GFDL/MOM6@66f808b add units to EPS_OMESH - NOAA-GFDL/MOM6@18c6f1e replace hard-coded mesh diff. limit with a param: eps_omesh - NOAA-GFDL/MOM6@d05235f Final GME code fix - NOAA-GFDL/MOM6@cc9e33d Adds new parameter, MEKE_EQUILIBRIUM_ALT - NOAA-GFDL/MOM6@7ad7296 remove labeled format specifiers - NOAA-GFDL/MOM6@d6277ca Merge pull request NOAA-GFDL#118 from gustavo-marques/consistency_check_nuopc - NOAA-GFDL/MOM6@fb1133e Replaces CICE to MOM in error messages - NOAA-GFDL/MOM6@d29a435 Adds consistency check between mesh and mom6 grid - NOAA-GFDL/MOM6@2ac12ce Deleting comments - NOAA-GFDL/MOM6@fa773cd Created new variables dvdx3/dudy3 for shearing strain on the Laplacian - NOAA-GFDL/MOM6@0aeec9d Adds correct calculation of GME at q points - NOAA-GFDL/MOM6@b339108 Groups terms for rotational invariance and deletes beta_h and beta_q (unused) - NOAA-GFDL/MOM6@3257801 Removes unneeded calls to pass_var and add calls to pass_vector - NOAA-GFDL/MOM6@3b7cb69 Fixes the remaining loop indices related to GME - NOAA-GFDL/MOM6@e778191 Deletes max_diss_rate_bt since it is never used - NOAA-GFDL/MOM6@93727f8 Fix first four loop indices suggested by Bob - NOAA-GFDL/MOM6@5ff5a93 Merge pull request NOAA-GFDL#117 from gustavo-marques/remove_kv_slow - NOAA-GFDL/MOM6@9f2f709 Removes visc%Kv_slow from restart files - NOAA-GFDL/MOM6@6e145df Obsolete parameter ADD_KV_SLOW - NOAA-GFDL/MOM6@b595da4 Merge pull request NOAA-GFDL#116 from gustavo-marques/fix_ocean_stats - NOAA-GFDL/MOM6@b61053b Replaces timenow with time_start and corrects comments. - NOAA-GFDL/MOM6@52225e3 Deletes blank line contains spaces - NOAA-GFDL/MOM6@4191689 Deletes unecessary if statement - NOAA-GFDL/MOM6@bd57605 Add time0 and timenow in NUOPC - NOAA-GFDL/MOM6@52b018b Add time0 and timenow in MCT
marshallward
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to marshallward/MOM6-examples
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Mar 7, 2024
The Makefiles for each executable have been updated to include a variable to the FMS source directory (FMS_CODEBASE) which is now passed to the FMS Makefile. This variable defaults to the FMS2 source, in order to align with autoconf changes in MOM6 which now default to FMS2 API. The FMS1 source and FMS symbolic link have been preserved, so no exisiting mkmf-based builds should be affected by this change. MOM6 has also been updated, which includes this commit to the default autoconf FMS API (f9da67331). Updated commits: - NOAA-GFDL/MOM6@714d2da17 Minor refactoring in set_viscous_BBL - NOAA-GFDL/MOM6@e1ea75847 Add the debugging routine test_L_open_concave - NOAA-GFDL/MOM6@da02ffc60 +Add find_L_open_concave_iterative - NOAA-GFDL/MOM6@2ae638504 Refactor set_viscous_BBL channel drag calculations - NOAA-GFDL/MOM6@f9da67331 Create BUILD and WORK directory macros - NOAA-GFDL/MOM6@fd5696ba0 Pinning package requirements for readthedocs - NOAA-GFDL/MOM6@d0e9c25a0 *Corrected CFC diagnostics and non-Bous CFC fluxes - NOAA-GFDL/MOM6@8f7df084d (*)non-Boussinesq Z unit update_OBC_segment_data - NOAA-GFDL/MOM6@86c5ed989 (*)Fix bug in h_neglect used to remap diags to rho - NOAA-GFDL/MOM6@f2e7abff8 MLE: Use default answer date outside of block (#570) - NOAA-GFDL/MOM6@e69d77107 Merge branch 'main' into dev/gfdl - NOAA-GFDL/MOM6@2ab885edd Merge pull request #1616 from NOAA-GFDL/dev-gfdl-main-candidate-2023-11-13 - NOAA-GFDL/MOM6@6d7c00a83 Restore bit repro using FMA in selected runs - NOAA-GFDL/MOM6@f92e4ac31 Update MOM_mixed_layer_restrat.F90 (#568) - NOAA-GFDL/MOM6@3f7465a57 +tracer_Z_init can rescale tracers - NOAA-GFDL/MOM6@f14a68107 (*)Use thickness_to_dz with BRYAN_LEWIS_DIFFUSIVITY - NOAA-GFDL/MOM6@0fb905fdc +(*)non-Boussinesq ALE_sponges work in Z units - NOAA-GFDL/MOM6@c37a2f0d0 Document core and linear EOS variable units - NOAA-GFDL/MOM6@de7e5b79f Document MOM_regridding and coord variable units - NOAA-GFDL/MOM6@4757bcb52 Remove some unused calculations if non-Boussinesq - NOAA-GFDL/MOM6@9282cd100 +(*)Bodner param with cuberoot and non-Boussinesq - NOAA-GFDL/MOM6@ea12532d8 Fix issue with restart filenames when using ensembles. - NOAA-GFDL/MOM6@9a6ddee47 *+non-Boussinesq revisions to MOM_generic_tracer - NOAA-GFDL/MOM6@e7a7a82ab (*)MOM_temp_salt_init_from_Z Z-unit tracer remap - NOAA-GFDL/MOM6@915cfe225 +ALE_remap_scalar with arbitrary thickness units - NOAA-GFDL/MOM6@07bace68c *Fix two bugs in convert_temp_salt_for_TEOS10 - NOAA-GFDL/MOM6@671c85d32 (*)Use cuberoot in ePBL_column - NOAA-GFDL/MOM6@736ef16a4 Cuberoot: Break **3 into explicit integer cubes - NOAA-GFDL/MOM6@5edba9b4d Cuberoot: Refactor (re|de)scale functions - NOAA-GFDL/MOM6@60cb551a3 Intrinsics: Faster cuberoot scaling functions - NOAA-GFDL/MOM6@76f066814 (*)Avoid using RHO_0 in non-Boussinesq averaging - NOAA-GFDL/MOM6@541c2f479 (*)Oil_tracer_column_physics unit conversion fix - NOAA-GFDL/MOM6@0de5c1493 Merge pull request #1618 from jiandewang/DEV-EMC-candidate-20230122 - NOAA-GFDL/MOM6@5ca70bac6 Open parameter block before querying BODNER23 - NOAA-GFDL/MOM6@f1e0f01a8 Params: Add do_not_log to param block open/close - NOAA-GFDL/MOM6@435ccaae4 Data table documentation (#551) - NOAA-GFDL/MOM6@17f1c40df Cuberoot: Apply first iteration explicitly (NOAA-GFDL#11) - NOAA-GFDL/MOM6@4813b17c2 *Use Halley method iterations in cuberoot function - NOAA-GFDL/MOM6@c8a7325c0 Merge pull request NOAA-GFDL#126 from DeniseWorthen/feature/restartfh - NOAA-GFDL/MOM6@d7d126a7f Update Gaea F5 datasets path - NOAA-GFDL/MOM6@d9c7bd950 Merge branch 'NOAA-EMC:dev/emc' into feature/restartfh - NOAA-GFDL/MOM6@a728ceaa5 allow restarts to be set on non-interval hours - NOAA-GFDL/MOM6@60c397b91 Merge pull request NOAA-GFDL#124 from jiandewang/feature/update-to-main-20231218 - NOAA-GFDL/MOM6@a03bb957c +Add cuberoot function - NOAA-GFDL/MOM6@db62734a9 Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20231218 - NOAA-GFDL/MOM6@40134ed86 change target to pointer and check for association - NOAA-GFDL/MOM6@7ef6a5725 Fix the saltFluxAdded diagnoistic, broken in NOAA-GFDL#401 - NOAA-GFDL/MOM6@f4c95ec4b Revert post_data fix to CFC concentration - NOAA-GFDL/MOM6@a36cb73d6 Merge pull request NOAA-GFDL#122 from jiandewang/feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@80a93f633 Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@e2c322eed Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@02d4dc455 Merge pull request NOAA-GFDL#120 from DeniseWorthen/feature/fldnames - NOAA-GFDL/MOM6@abb0ad24f switch to cesm-style field names
marshallward
added a commit
to marshallward/MOM6-examples
that referenced
this pull request
Mar 7, 2024
The Makefiles for each model have been updated to include a variable to the FMS source directory (FMS_CODEBASE) which is now passed to the FMS Makefile. FMS_CODEBASE defaults to the FMS2 source, in order to align with autoconf changes in MOM6 which now default to FMS2 API. The AM2-based models default to FMS1, with separate FMS1-based build directories for FMS, icebergs, and ice_param. The FMS1 source and FMS symbolic link have been preserved, so no exisiting mkmf-based builds should be affected by this change. The MOM6 submodule has also been updated, which includes the commit which updates the default autoconf FMS API (f9da67331). Updated commits: - NOAA-GFDL/MOM6@714d2da17 Minor refactoring in set_viscous_BBL - NOAA-GFDL/MOM6@e1ea75847 Add the debugging routine test_L_open_concave - NOAA-GFDL/MOM6@da02ffc60 +Add find_L_open_concave_iterative - NOAA-GFDL/MOM6@2ae638504 Refactor set_viscous_BBL channel drag calculations - NOAA-GFDL/MOM6@f9da67331 Create BUILD and WORK directory macros - NOAA-GFDL/MOM6@fd5696ba0 Pinning package requirements for readthedocs - NOAA-GFDL/MOM6@d0e9c25a0 *Corrected CFC diagnostics and non-Bous CFC fluxes - NOAA-GFDL/MOM6@8f7df084d (*)non-Boussinesq Z unit update_OBC_segment_data - NOAA-GFDL/MOM6@86c5ed989 (*)Fix bug in h_neglect used to remap diags to rho - NOAA-GFDL/MOM6@f2e7abff8 MLE: Use default answer date outside of block (#570) - NOAA-GFDL/MOM6@e69d77107 Merge branch 'main' into dev/gfdl - NOAA-GFDL/MOM6@2ab885edd Merge pull request #1616 from NOAA-GFDL/dev-gfdl-main-candidate-2023-11-13 - NOAA-GFDL/MOM6@6d7c00a83 Restore bit repro using FMA in selected runs - NOAA-GFDL/MOM6@f92e4ac31 Update MOM_mixed_layer_restrat.F90 (#568) - NOAA-GFDL/MOM6@3f7465a57 +tracer_Z_init can rescale tracers - NOAA-GFDL/MOM6@f14a68107 (*)Use thickness_to_dz with BRYAN_LEWIS_DIFFUSIVITY - NOAA-GFDL/MOM6@0fb905fdc +(*)non-Boussinesq ALE_sponges work in Z units - NOAA-GFDL/MOM6@c37a2f0d0 Document core and linear EOS variable units - NOAA-GFDL/MOM6@de7e5b79f Document MOM_regridding and coord variable units - NOAA-GFDL/MOM6@4757bcb52 Remove some unused calculations if non-Boussinesq - NOAA-GFDL/MOM6@9282cd100 +(*)Bodner param with cuberoot and non-Boussinesq - NOAA-GFDL/MOM6@ea12532d8 Fix issue with restart filenames when using ensembles. - NOAA-GFDL/MOM6@9a6ddee47 *+non-Boussinesq revisions to MOM_generic_tracer - NOAA-GFDL/MOM6@e7a7a82ab (*)MOM_temp_salt_init_from_Z Z-unit tracer remap - NOAA-GFDL/MOM6@915cfe225 +ALE_remap_scalar with arbitrary thickness units - NOAA-GFDL/MOM6@07bace68c *Fix two bugs in convert_temp_salt_for_TEOS10 - NOAA-GFDL/MOM6@671c85d32 (*)Use cuberoot in ePBL_column - NOAA-GFDL/MOM6@736ef16a4 Cuberoot: Break **3 into explicit integer cubes - NOAA-GFDL/MOM6@5edba9b4d Cuberoot: Refactor (re|de)scale functions - NOAA-GFDL/MOM6@60cb551a3 Intrinsics: Faster cuberoot scaling functions - NOAA-GFDL/MOM6@76f066814 (*)Avoid using RHO_0 in non-Boussinesq averaging - NOAA-GFDL/MOM6@541c2f479 (*)Oil_tracer_column_physics unit conversion fix - NOAA-GFDL/MOM6@0de5c1493 Merge pull request #1618 from jiandewang/DEV-EMC-candidate-20230122 - NOAA-GFDL/MOM6@5ca70bac6 Open parameter block before querying BODNER23 - NOAA-GFDL/MOM6@f1e0f01a8 Params: Add do_not_log to param block open/close - NOAA-GFDL/MOM6@435ccaae4 Data table documentation (#551) - NOAA-GFDL/MOM6@17f1c40df Cuberoot: Apply first iteration explicitly (NOAA-GFDL#11) - NOAA-GFDL/MOM6@4813b17c2 *Use Halley method iterations in cuberoot function - NOAA-GFDL/MOM6@c8a7325c0 Merge pull request NOAA-GFDL#126 from DeniseWorthen/feature/restartfh - NOAA-GFDL/MOM6@d7d126a7f Update Gaea F5 datasets path - NOAA-GFDL/MOM6@d9c7bd950 Merge branch 'NOAA-EMC:dev/emc' into feature/restartfh - NOAA-GFDL/MOM6@a728ceaa5 allow restarts to be set on non-interval hours - NOAA-GFDL/MOM6@60c397b91 Merge pull request NOAA-GFDL#124 from jiandewang/feature/update-to-main-20231218 - NOAA-GFDL/MOM6@a03bb957c +Add cuberoot function - NOAA-GFDL/MOM6@db62734a9 Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20231218 - NOAA-GFDL/MOM6@40134ed86 change target to pointer and check for association - NOAA-GFDL/MOM6@7ef6a5725 Fix the saltFluxAdded diagnoistic, broken in NOAA-GFDL#401 - NOAA-GFDL/MOM6@f4c95ec4b Revert post_data fix to CFC concentration - NOAA-GFDL/MOM6@a36cb73d6 Merge pull request NOAA-GFDL#122 from jiandewang/feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@80a93f633 Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@e2c322eed Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@02d4dc455 Merge pull request NOAA-GFDL#120 from DeniseWorthen/feature/fldnames - NOAA-GFDL/MOM6@abb0ad24f switch to cesm-style field names
marshallward
added a commit
to marshallward/MOM6-examples
that referenced
this pull request
Mar 8, 2024
The Makefiles for each model have been updated to include a variable to the FMS source directory (FMS_CODEBASE) which is now passed to the FMS Makefile. FMS_CODEBASE defaults to the FMS2 source, in order to align with autoconf changes in MOM6 which now default to FMS2 API. The AM2-based models default to FMS1, with separate FMS1-based build directories for FMS, icebergs, and ice_param. The FMS1 source and FMS symbolic link have been preserved, so no exisiting mkmf-based builds should be affected by this change. The MOM6 submodule has also been updated, which includes the commit which updates the default autoconf FMS API (f9da67331). Updated commits: - NOAA-GFDL/MOM6@714d2da17 Minor refactoring in set_viscous_BBL - NOAA-GFDL/MOM6@e1ea75847 Add the debugging routine test_L_open_concave - NOAA-GFDL/MOM6@da02ffc60 +Add find_L_open_concave_iterative - NOAA-GFDL/MOM6@2ae638504 Refactor set_viscous_BBL channel drag calculations - NOAA-GFDL/MOM6@f9da67331 Create BUILD and WORK directory macros - NOAA-GFDL/MOM6@fd5696ba0 Pinning package requirements for readthedocs - NOAA-GFDL/MOM6@d0e9c25a0 *Corrected CFC diagnostics and non-Bous CFC fluxes - NOAA-GFDL/MOM6@8f7df084d (*)non-Boussinesq Z unit update_OBC_segment_data - NOAA-GFDL/MOM6@86c5ed989 (*)Fix bug in h_neglect used to remap diags to rho - NOAA-GFDL/MOM6@f2e7abff8 MLE: Use default answer date outside of block (#570) - NOAA-GFDL/MOM6@e69d77107 Merge branch 'main' into dev/gfdl - NOAA-GFDL/MOM6@2ab885edd Merge pull request #1616 from NOAA-GFDL/dev-gfdl-main-candidate-2023-11-13 - NOAA-GFDL/MOM6@6d7c00a83 Restore bit repro using FMA in selected runs - NOAA-GFDL/MOM6@f92e4ac31 Update MOM_mixed_layer_restrat.F90 (#568) - NOAA-GFDL/MOM6@3f7465a57 +tracer_Z_init can rescale tracers - NOAA-GFDL/MOM6@f14a68107 (*)Use thickness_to_dz with BRYAN_LEWIS_DIFFUSIVITY - NOAA-GFDL/MOM6@0fb905fdc +(*)non-Boussinesq ALE_sponges work in Z units - NOAA-GFDL/MOM6@c37a2f0d0 Document core and linear EOS variable units - NOAA-GFDL/MOM6@de7e5b79f Document MOM_regridding and coord variable units - NOAA-GFDL/MOM6@4757bcb52 Remove some unused calculations if non-Boussinesq - NOAA-GFDL/MOM6@9282cd100 +(*)Bodner param with cuberoot and non-Boussinesq - NOAA-GFDL/MOM6@ea12532d8 Fix issue with restart filenames when using ensembles. - NOAA-GFDL/MOM6@9a6ddee47 *+non-Boussinesq revisions to MOM_generic_tracer - NOAA-GFDL/MOM6@e7a7a82ab (*)MOM_temp_salt_init_from_Z Z-unit tracer remap - NOAA-GFDL/MOM6@915cfe225 +ALE_remap_scalar with arbitrary thickness units - NOAA-GFDL/MOM6@07bace68c *Fix two bugs in convert_temp_salt_for_TEOS10 - NOAA-GFDL/MOM6@671c85d32 (*)Use cuberoot in ePBL_column - NOAA-GFDL/MOM6@736ef16a4 Cuberoot: Break **3 into explicit integer cubes - NOAA-GFDL/MOM6@5edba9b4d Cuberoot: Refactor (re|de)scale functions - NOAA-GFDL/MOM6@60cb551a3 Intrinsics: Faster cuberoot scaling functions - NOAA-GFDL/MOM6@76f066814 (*)Avoid using RHO_0 in non-Boussinesq averaging - NOAA-GFDL/MOM6@541c2f479 (*)Oil_tracer_column_physics unit conversion fix - NOAA-GFDL/MOM6@0de5c1493 Merge pull request #1618 from jiandewang/DEV-EMC-candidate-20230122 - NOAA-GFDL/MOM6@5ca70bac6 Open parameter block before querying BODNER23 - NOAA-GFDL/MOM6@f1e0f01a8 Params: Add do_not_log to param block open/close - NOAA-GFDL/MOM6@435ccaae4 Data table documentation (#551) - NOAA-GFDL/MOM6@17f1c40df Cuberoot: Apply first iteration explicitly (NOAA-GFDL#11) - NOAA-GFDL/MOM6@4813b17c2 *Use Halley method iterations in cuberoot function - NOAA-GFDL/MOM6@c8a7325c0 Merge pull request NOAA-GFDL#126 from DeniseWorthen/feature/restartfh - NOAA-GFDL/MOM6@d7d126a7f Update Gaea F5 datasets path - NOAA-GFDL/MOM6@d9c7bd950 Merge branch 'NOAA-EMC:dev/emc' into feature/restartfh - NOAA-GFDL/MOM6@a728ceaa5 allow restarts to be set on non-interval hours - NOAA-GFDL/MOM6@60c397b91 Merge pull request NOAA-GFDL#124 from jiandewang/feature/update-to-main-20231218 - NOAA-GFDL/MOM6@a03bb957c +Add cuberoot function - NOAA-GFDL/MOM6@db62734a9 Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20231218 - NOAA-GFDL/MOM6@40134ed86 change target to pointer and check for association - NOAA-GFDL/MOM6@7ef6a5725 Fix the saltFluxAdded diagnoistic, broken in NOAA-GFDL#401 - NOAA-GFDL/MOM6@f4c95ec4b Revert post_data fix to CFC concentration - NOAA-GFDL/MOM6@a36cb73d6 Merge pull request NOAA-GFDL#122 from jiandewang/feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@80a93f633 Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@e2c322eed Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@02d4dc455 Merge pull request NOAA-GFDL#120 from DeniseWorthen/feature/fldnames - NOAA-GFDL/MOM6@abb0ad24f switch to cesm-style field names
marshallward
added a commit
that referenced
this pull request
Mar 8, 2024
The Makefiles for each model have been updated to include a variable to the FMS source directory (FMS_CODEBASE) which is now passed to the FMS Makefile. FMS_CODEBASE defaults to the FMS2 source, in order to align with autoconf changes in MOM6 which now default to FMS2 API. The AM2-based models default to FMS1, with separate FMS1-based build directories for FMS, icebergs, and ice_param. The FMS1 source and FMS symbolic link have been preserved, so no exisiting mkmf-based builds should be affected by this change. The MOM6 submodule has also been updated, which includes the commit which updates the default autoconf FMS API (f9da67331). Updated commits: - NOAA-GFDL/MOM6@714d2da17 Minor refactoring in set_viscous_BBL - NOAA-GFDL/MOM6@e1ea75847 Add the debugging routine test_L_open_concave - NOAA-GFDL/MOM6@da02ffc60 +Add find_L_open_concave_iterative - NOAA-GFDL/MOM6@2ae638504 Refactor set_viscous_BBL channel drag calculations - NOAA-GFDL/MOM6@f9da67331 Create BUILD and WORK directory macros - NOAA-GFDL/MOM6@fd5696ba0 Pinning package requirements for readthedocs - NOAA-GFDL/MOM6@d0e9c25a0 *Corrected CFC diagnostics and non-Bous CFC fluxes - NOAA-GFDL/MOM6@8f7df084d (*)non-Boussinesq Z unit update_OBC_segment_data - NOAA-GFDL/MOM6@86c5ed989 (*)Fix bug in h_neglect used to remap diags to rho - NOAA-GFDL/MOM6@f2e7abff8 MLE: Use default answer date outside of block (#570) - NOAA-GFDL/MOM6@e69d77107 Merge branch 'main' into dev/gfdl - NOAA-GFDL/MOM6@2ab885edd Merge pull request #1616 from NOAA-GFDL/dev-gfdl-main-candidate-2023-11-13 - NOAA-GFDL/MOM6@6d7c00a83 Restore bit repro using FMA in selected runs - NOAA-GFDL/MOM6@f92e4ac31 Update MOM_mixed_layer_restrat.F90 (#568) - NOAA-GFDL/MOM6@3f7465a57 +tracer_Z_init can rescale tracers - NOAA-GFDL/MOM6@f14a68107 (*)Use thickness_to_dz with BRYAN_LEWIS_DIFFUSIVITY - NOAA-GFDL/MOM6@0fb905fdc +(*)non-Boussinesq ALE_sponges work in Z units - NOAA-GFDL/MOM6@c37a2f0d0 Document core and linear EOS variable units - NOAA-GFDL/MOM6@de7e5b79f Document MOM_regridding and coord variable units - NOAA-GFDL/MOM6@4757bcb52 Remove some unused calculations if non-Boussinesq - NOAA-GFDL/MOM6@9282cd100 +(*)Bodner param with cuberoot and non-Boussinesq - NOAA-GFDL/MOM6@ea12532d8 Fix issue with restart filenames when using ensembles. - NOAA-GFDL/MOM6@9a6ddee47 *+non-Boussinesq revisions to MOM_generic_tracer - NOAA-GFDL/MOM6@e7a7a82ab (*)MOM_temp_salt_init_from_Z Z-unit tracer remap - NOAA-GFDL/MOM6@915cfe225 +ALE_remap_scalar with arbitrary thickness units - NOAA-GFDL/MOM6@07bace68c *Fix two bugs in convert_temp_salt_for_TEOS10 - NOAA-GFDL/MOM6@671c85d32 (*)Use cuberoot in ePBL_column - NOAA-GFDL/MOM6@736ef16a4 Cuberoot: Break **3 into explicit integer cubes - NOAA-GFDL/MOM6@5edba9b4d Cuberoot: Refactor (re|de)scale functions - NOAA-GFDL/MOM6@60cb551a3 Intrinsics: Faster cuberoot scaling functions - NOAA-GFDL/MOM6@76f066814 (*)Avoid using RHO_0 in non-Boussinesq averaging - NOAA-GFDL/MOM6@541c2f479 (*)Oil_tracer_column_physics unit conversion fix - NOAA-GFDL/MOM6@0de5c1493 Merge pull request #1618 from jiandewang/DEV-EMC-candidate-20230122 - NOAA-GFDL/MOM6@5ca70bac6 Open parameter block before querying BODNER23 - NOAA-GFDL/MOM6@f1e0f01a8 Params: Add do_not_log to param block open/close - NOAA-GFDL/MOM6@435ccaae4 Data table documentation (#551) - NOAA-GFDL/MOM6@17f1c40df Cuberoot: Apply first iteration explicitly (#11) - NOAA-GFDL/MOM6@4813b17c2 *Use Halley method iterations in cuberoot function - NOAA-GFDL/MOM6@c8a7325c0 Merge pull request #126 from DeniseWorthen/feature/restartfh - NOAA-GFDL/MOM6@d7d126a7f Update Gaea F5 datasets path - NOAA-GFDL/MOM6@d9c7bd950 Merge branch 'NOAA-EMC:dev/emc' into feature/restartfh - NOAA-GFDL/MOM6@a728ceaa5 allow restarts to be set on non-interval hours - NOAA-GFDL/MOM6@60c397b91 Merge pull request #124 from jiandewang/feature/update-to-main-20231218 - NOAA-GFDL/MOM6@a03bb957c +Add cuberoot function - NOAA-GFDL/MOM6@db62734a9 Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20231218 - NOAA-GFDL/MOM6@40134ed86 change target to pointer and check for association - NOAA-GFDL/MOM6@7ef6a5725 Fix the saltFluxAdded diagnoistic, broken in #401 - NOAA-GFDL/MOM6@f4c95ec4b Revert post_data fix to CFC concentration - NOAA-GFDL/MOM6@a36cb73d6 Merge pull request #122 from jiandewang/feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@80a93f633 Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@e2c322eed Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031 - NOAA-GFDL/MOM6@02d4dc455 Merge pull request #120 from DeniseWorthen/feature/fldnames - NOAA-GFDL/MOM6@abb0ad24f switch to cesm-style field names
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