MOM6: Streaming filter (#675)

- NOAA-GFDL/MOM6@95744a71b Streaming filter (#675)
- NOAA-GFDL/MOM6@2316ae56e diffusivities from internal tides ray tracing algo (#677)
- NOAA-GFDL/MOM6@91eee521d Inline harmonic analysis
- NOAA-GFDL/MOM6@a6dd0fd0d Makedep output cleanup and PEP8 fixes
- NOAA-GFDL/MOM6@d234bce95 Restore computation of vorticity in MOM_hor_visc.F90
- NOAA-GFDL/MOM6@2024f6fed Directional linear wave drag (#703)
- NOAA-GFDL/MOM6@42c1a3294 Fix USE_CONT_THICKNESS bug
- NOAA-GFDL/MOM6@a78aa5797 * Fix for spatially varying Bodner fields.
- NOAA-GFDL/MOM6@fd82861e3 (*)Add parentheses in end_value_h4 for FMAs
- NOAA-GFDL/MOM6@ffa766b45 (*)More parentheses in density_integrals for FMAs
- NOAA-GFDL/MOM6@e810ac537 (*)Parenthesize tracer_advect PPM edge values
- NOAA-GFDL/MOM6@182223c50 (*)Parenthesize diagnostics for FMAs
- NOAA-GFDL/MOM6@44f1130fc (*)Parenthesize parameterization squares for FMAs
- NOAA-GFDL/MOM6@fc2af28ed (*)Parenthesize initialization squares for FMAs
- NOAA-GFDL/MOM6@ffef92f7f (*)Parenthesize MOM_hor_visc for FMAs
- NOAA-GFDL/MOM6@6216fa1f5 (*)Parenthesize MOM_lateral_mixing_coeffs for FMAs
- NOAA-GFDL/MOM6@46e8b661e (*)Parenthesize MOM_barotropic for FMAs
- NOAA-GFDL/MOM6@64b851c4e (*)Parenthesize CorAdCalc for FMAs
- NOAA-GFDL/MOM6@f0c52ddb1 (*)Parenthesize MOM_set_diffusivity for FMAs
- NOAA-GFDL/MOM6@0b50a155a (*)Rearrange calc_kappa_shear_vertex for FMAs
- NOAA-GFDL/MOM6@c0bef189a (*)Parenthesize set_viscous_ML for FMAs
- NOAA-GFDL/MOM6@ebf02a97a (*)Parenthesize find_uv_at_h for FMAs
- NOAA-GFDL/MOM6@654cd4aab (*)Parenthesize MOM_internal_tides for FMAs
- NOAA-GFDL/MOM6@03dc6f9a5 (*)Parenthesize Zanna_Bolton for FMAs
- NOAA-GFDL/MOM6@49419f732 (*)Parenthesize thickness_diffuse for FMAs
- NOAA-GFDL/MOM6@56d053a04 +(*)Add and use G%Coriolis2Bu
- NOAA-GFDL/MOM6@5398e6fdf (*)Parenthesize CoriolisStokes and LA_Stk for FMAs
- NOAA-GFDL/MOM6@b2beab215 (*)Parenthesize iceberg_forces for FMAs
- NOAA-GFDL/MOM6@c344a117f (*)Parenthesize tracer_hordiff for FMAs
- NOAA-GFDL/MOM6@ce559ce64 (*)Parenthesize MOM_calc_varT for FMAs
- NOAA-GFDL/MOM6@307a4e2e5 (*)Parenthesize calc_isoneutral_slopes for FMAs
- NOAA-GFDL/MOM6@99fd95796 (*)Parenthesize PressureForce_Montgomery for FMAs
- NOAA-GFDL/MOM6@8066a3da0 (*)Simplify density integral parentheses
- NOAA-GFDL/MOM6@24091ccf0 (*)Add parentheses to 4 EOS int_density routines
- NOAA-GFDL/MOM6@9172cd576 (*)Add parentheses for density_integrals with FMAs
- NOAA-GFDL/MOM6@4f710efb0 (*)Add parentheses for oblique OBCs with FMAs
- NOAA-GFDL/MOM6@f0e61f30c (*)Parenthesize continuity_PPM curv_3 expressions
- NOAA-GFDL/MOM6@6628dbff5 (*)Parenthesize squares of wind stresses for FMAs

coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

coupled_AM2_LM3_SIS2/Concurrent_ice_1deg/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

coupled_AM2_LM3_SIS2/Intersperse_ice_1deg/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/Baltic/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_parameter_doc.all

@@ -376,6 +376,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/Baltic_OM4_025/MOM_parameter_doc.all

@@ -384,6 +384,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/Baltic_OM4_05/MOM_parameter_doc.all

@@ -384,6 +384,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all

@@ -384,6 +384,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all

@@ -384,6 +384,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.all

@@ -375,6 +375,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/SIS2/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/SIS2_bergs_cgrid/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ice_ocean_SIS2/SIS2_cgrid/MOM_parameter_doc.all

@@ -349,6 +349,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/DOME/MOM_parameter_doc.all

@@ -366,6 +366,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/Phillips_2layer/MOM_parameter_doc.all

@@ -301,6 +301,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/adjustment2d/layer/MOM_parameter_doc.all

@@ -354,6 +354,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/adjustment2d/rho/MOM_parameter_doc.all

@@ -363,6 +363,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/adjustment2d/z/MOM_parameter_doc.all

@@ -363,6 +363,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/benchmark/MOM_parameter_doc.all

@@ -356,6 +356,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/circle_obcs/MOM_parameter_doc.all

@@ -372,6 +372,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/double_gyre/MOM_parameter_doc.all

@@ -291,6 +291,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False

ocean_only/external_gwave/MOM_parameter_doc.all

@@ -354,6 +354,12 @@ RESTART_CHECKSUMS_REQUIRED = True !   [Boolean] default = True
                                 ! may want to avoid this comparison if for example the restarts are made from a
                                 ! run with a different mask_table than the current run, in which case the
                                 ! checksums will not match and cause crash.
+STREAMING_FILTER_M2 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
+STREAMING_FILTER_K1 = False     !   [Boolean] default = False
+                                ! If true, turn on streaming band-pass filter for detecting instantaneous tidal
+                                ! signals.
 
 ! === module MOM_tracer_flow_control ===
 USE_USER_TRACER_EXAMPLE = False !   [Boolean] default = False