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Port release/gefs_v12 to WCOSS2 #505

Merged
merged 33 commits into from
Nov 17, 2021
Merged

Port release/gefs_v12 to WCOSS2 #505

merged 33 commits into from
Nov 17, 2021

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XianwuXue-NOAA
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@XianwuXue-NOAA
Update GSL-prep-chem & FV3-GSDCHEM-WW3 from vlab to github
c8e49b4 
 On branch feature/gefs_v12_github
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#348
@XianwuXue-NOAA
Change the components in g-w to use my repo
cd784f5 
For the next porting to acorn

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Add acorn to sorc/machine-setup.sh
28959d2 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/machine-setup.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Port program enkf_chgres_recenter_nc to acorn
6455a1b 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	new file:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.acorn

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Port gfs_bufr & tocsbufr to acorn
9a073b7 
Issue is there is no SIGIO_LIB4 & SIGIO_INC4 in module sigio/2.3.2
	I use SIGIO_INC and SIGIO_LIB to assign values to them

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	new file:   modulefiles/gfs_bufr.acorn

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Port sorc/build_gsd_prep_chem.sh to acorn
35ab5a5 
 On branch feature/gefs_v12_github_port2acorn
	modified:   sorc/build_gsd_prep_chem.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Add acorn to build_ufs_utils.sh
41fdb45 
 On branch feature/gefs_v12_github_port2acorn
	modified:   sorc/build_ufs_utils.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update modules after Acorn environment changed
2b9a2d2 
 On branch feature/gefs_v12_github_port2acorn
	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.acorn
	modified:   modulefiles/gfs_bufr.acorn
	modified:   sorc/machine-setup.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update the checkout repo/branches for transition
606afde 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Change acorn to wcoss2
76d6b69 
 On branch feature/gefs_v12_github_port2acorn
	renamed:    modulefiles/fv3gfs/enkf_chgres_recenter_nc.acorn -> modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss2
	renamed:    modulefiles/gfs_bufr.acorn -> modulefiles/gfs_bufr.wcoss2
	modified:   sorc/build_gsd_prep_chem.sh
	modified:   sorc/build_ufs_utils.sh
	modified:   sorc/machine-setup.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Remove jlogfile and modify format of wavempexec
f1929b8 
1) Remote jlogfile
2) Modify format of wavempexec, however, may be changed
	in the future

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   scripts/exwave_init.sh
	modified:   scripts/exwave_prep.sh
	modified:   ush/wave_grid_moddef.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update the checkout.sh to checkout latest repos
c956245 
which have ported to WCOSS2

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Port link_fv3gfs.sh to WCOSS2 and improve it
e82f1c4 
To link needed parm file for chem to parm
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/link_fv3gfs.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Add calc_increment_ens_ncio.x to link_fv3gfs.sh
af38db9 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/link_fv3gfs.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Remove the unused sorc folders in link_fv3gfs.sh
b5c9d9b 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/link_fv3gfs.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Add version of PrgEnv-intel and use hdf5/netcdf
7ab32de 
1) Add version of PrgEnv-intel
2) Replace hdf5-parallel/netcdf-hdf5parallel using hdf5/netcdf

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss2
	modified:   modulefiles/gfs_bufr.wcoss2

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Remove jlogfile and modify waveexe for wcoss2
404edb3 
1) Remove jlogfile based on new standard for wcoss2
2) Modify the format of wavempexec for wcoss2

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   scripts/exglobal_fcst_nemsfv3gfs.sh
	modified:   scripts/exwave_init.sh
	modified:   scripts/exwave_post_sbs.sh
	modified:   scripts/exwave_prep.sh
	modified:   scripts/exwave_stat.sh
	modified:   ush/wave_ens_bull.sh
	modified:   ush/wave_ens_stat.sh
	modified:   ush/wave_grib2_sbs.sh
	modified:   ush/wave_grid_interp_sbs.sh
	modified:   ush/wave_grid_moddef.sh
	modified:   ush/wave_outp_spec.sh
	modified:   ush/wave_prnc_ice.sh
	modified:   ush/wave_tar.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Change back for scripts/exwave_stat.sh
98a5a9f 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   scripts/exwave_stat.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Change NETCDF4 to NETCDF,remove "-lhdf5_hl -lhdf5"
8ac03a5 
Due to the new NetCDF lib
1) Change NETCDF4 to NETCDF
2) Remove "-lhdf5_hl -lhdf5"
Update gfsfix path to Kate's path

 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   enkf_chgres_recenter_nc.fd/CMakeLists.txt
	modified:   enkf_chgres_recenter_nc.fd/src/makefile
	modified:   link_fv3gfs.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update some modules using new versions
3f4a5de 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   ../modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss2
	modified:   ../modulefiles/gfs_bufr.wcoss2

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update modules to new version in gfs_bufr
d4ad994 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   modulefiles/gfs_bufr.wcoss2

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update build modules to remove hardwired ver nums
b3ad62b 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss2
	modified:   modulefiles/gfs_bufr.wcoss2

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Change UPP from Xianwu.Xue repo to EMC repo
5539bfb 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update checkout.sh to use new gsi branch
59feb05 
 On branch feature/gefs_v12_github_port2acorn
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update gsd-prep-chem to use NOAA-GSL repo
c330c2e 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update checkout.sh to switch back to EMC repo
c025be3 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Merge branch 'feature/gefs_v12_github_port2acorn' of https://github.c…
45e75a0 
…om/XianwuXue-NOAA/global-workflow into feature/gefs_v12_github_port2acorn
@XianwuXue-NOAA
Update gsi back to EMC repo in checkout.sh
f170fe9 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Update checkout.sh to use tag of UPP
f310f3c 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Change FV3-GSDCHEM-WW3 back to EMC repo
3e39692 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Clean up the unused statements
7c12d40 
 On branch feature/gefs_v12_github_port2acorn
	modified:   scripts/exwave_init.sh
	modified:   scripts/exwave_post_sbs.sh
	modified:   scripts/exwave_prep.sh
	modified:   sorc/machine-setup.sh
	modified:   ush/wave_grid_moddef.sh

Refs: NOAA-EMC#345
WalterKolczynski-NOAA
WalterKolczynski-NOAA requested changes Nov 16, 2021
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sorc/link_fv3gfs.sh
@@ -38,6 +38,8 @@ elif [ $machine = "theia" ]; then
FIX_DIR="/scratch4/NCEPDEV/global/save/glopara/git/fv3gfs/fix"
elif [ $machine = "hera" ]; then
FIX_DIR="/scratch1/NCEPDEV/global/glopara/fix"
elif [ $machine = "wcoss2" ]; then
FIX_DIR="/lfs/h2/emc/global/noscrub/Kate.Friedman/glopara/FIX/fix_nco_gfsv15"
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@KateFriedman-NOAA is this the final resting place for GFS v15 fix data?

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@WalterKolczynski-NOAA No, I need the global group account space to host these. That will be the final resting place, my copies are meant to be temporary. @arunchawla-NOAA Any update on setting up the global group account on WCOSS2? We have a bunch of stuff to host under it, like fix files for hand-off.

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Thanks @WalterKolczynski-NOAA and @KateFriedman-NOAA I am also waiting for the final resting place to freeze the code GEFSv12

sorc/link_fv3gfs.sh Outdated
@@ -180,12 +183,12 @@ if [ $machine = dell -o $machine = hera ]; then
done
fi

for ufs_utilsexe in chgres_cube nemsio_get nemsio_read global_chgres ; do
for ufs_utilsexe in chgres_cube ; do # nemsio_get nemsio_read global_chgres ; do
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Remove old executables

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No problem. I will delete in the next commit.

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@XianwuXue-NOAA
Change checkout branch to tag for FV3-GSDCHEM-WW3
402b83f 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/checkout.sh

Refs: NOAA-EMC#345
@XianwuXue-NOAA
Remove unused statements
5368f4d 
 On branch feature/gefs_v12_github_port2acorn
 Changes to be committed:
	modified:   sorc/enkf_chgres_recenter_nc.fd/src/makefile
	modified:   sorc/link_fv3gfs.sh

Refs: NOAA-EMC#345
WalterKolczynski-NOAA
WalterKolczynski-NOAA approved these changes Nov 17, 2021
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Good to merge. No tag until fix gets a final location.

@XianwuXue-NOAA
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Good to merge. No tag until fix gets a final location.

Agree. Once I got the final resting location of the fix folder, I will commit it.

@WalterKolczynski-NOAA WalterKolczynski-NOAA merged commit d073ead into NOAA-EMC:release/gefs_v12 Nov 17, 2021
@XianwuXue-NOAA XianwuXue-NOAA deleted the feature/gefs_v12_github_port2acorn branch October 31, 2022 16:19
kayeekayee pushed a commit to kayeekayee/global-workflow that referenced this pull request May 30, 2024
@WenMeng-NOAA
update upp revision (NOAA-EMC#505)
55e98b2
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Reviewers

@WalterKolczynski-NOAA WalterKolczynski-NOAA WalterKolczynski-NOAA approved these changes

@KateFriedman-NOAA KateFriedman-NOAA Awaiting requested review from KateFriedman-NOAA

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3 participants
@XianwuXue-NOAA @WalterKolczynski-NOAA @KateFriedman-NOAA