Dummy PR to trigger CI

.github/pull_request_template.md

@@ -33,6 +33,17 @@
 # Change characteristics
 - Is this a breaking change (a change in existing functionality)? YES/NO
 - Does this change require a documentation update? YES/NO
+- Does this change require an update to any of the following submodules? YES/NO (If YES, please add a link to any PRs that are pending.)
+  - [ ] EMC verif-global
+  - [ ] GDAS
+  - [ ] GFS-utils
+  - [ ] GSI
+  - [ ] GSI-monitor
+  - [ ] GSI-utils
+  - [ ] UFS-utils
+  - [ ] UFS-weather-model
+  - [ ] wxflow
+
 
 # How has this been tested?
 <!-- Please list any test you conducted, including the machine.

.github/workflows/ci_unit_tests.yaml

@@ -0,0 +1,64 @@
+name: CI Unit Tests
+on: [pull_request, push, workflow_dispatch]
+
+jobs:
+
+  ci_pytest:
+      runs-on: ubuntu-latest
+      name: Run unit tests on CI system      
+      permissions:
+        checks: write
+
+      steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11.8
+
+      - name: Install dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y perl libxml-libxml-perl libxml-libxslt-perl libdatetime-perl
+          python -m pip install --upgrade pip
+          pip install pytest
+          pip install wxflow
+          pip install wget
+
+      - name: Cache Rocoto Install
+        uses: actions/cache@v4
+        with:
+          path: ~/rocoto
+          key: ${{ runner.os }}-rocoto-${{ hashFiles('**/ci-unit_tests.yaml') }}
+
+      - name: Install Rocoto
+        run: |
+          if [ ! -d "$HOME/rocoto/bin" ]; then
+            git clone https://github.com/christopherwharrop/rocoto.git $HOME/rocoto
+            cd $HOME/rocoto
+            ./INSTALL
+          fi
+          echo "$HOME/rocoto/bin" >> $GITHUB_PATH
+
+      - name: Run tests
+        shell: bash
+        run: |
+          sudo mkdir -p /scratch1/NCEPDEV
+          cd $GITHUB_WORKSPACE/sorc
+          git submodule update --init
+          ./link_workflow.sh
+          cd $GITHUB_WORKSPACE/ci/scripts/tests
+          ln -s ../wxflow
+
+          pytest -v --junitxml $GITHUB_WORKSPACE/ci/scripts/tests/test-results.xml
+
+
+      - name: Publish Test Results
+        if: always()
+        uses: EnricoMi/publish-unit-test-result-action@v2
+        with:
+          files: ci/scripts/tests/test-results.xml
+          job_summary: true
+          comment_mode: off

.gitignore

@@ -35,8 +35,10 @@ fix/gsi
 fix/lut
 fix/mom6
 fix/orog
+fix/orog_nest
 fix/sfc_climo
 fix/ugwd
+fix/ugwd_nest
 fix/verif
 fix/wave
 
@@ -51,11 +53,8 @@ parm/gdas/soca
 parm/gdas/jcb-gdas
 parm/gdas/jcb-algorithms
 parm/monitor
-parm/post/AEROSOL_LUTS.dat
 parm/post/nam_micro_lookup.dat
 parm/post/optics_luts_DUST.dat
-parm/post/gtg.config.gfs
-parm/post/gtg_imprintings.txt
 parm/post/optics_luts_DUST_nasa.dat
 parm/post/optics_luts_NITR_nasa.dat
 parm/post/optics_luts_SALT.dat
@@ -68,51 +67,19 @@ parm/post/optics_luts_WASO.dat
 parm/post/optics_luts_WASO_nasa.dat
 parm/post/params_grib2_tbl_new
 parm/post/post_tag_gfs128
-parm/post/post_tag_gfs65
-parm/post/postcntrl_gefs.xml
-parm/post/postcntrl_gefs_aerosol.xml
-parm/post/postcntrl_gefs_anl.xml
-parm/post/postcntrl_gefs_chem.xml
-parm/post/postcntrl_gefs_f00.xml
-parm/post/postcntrl_gfs.xml
-parm/post/postcntrl_gfs_anl.xml
-parm/post/postcntrl_gfs_f00.xml
-parm/post/postcntrl_gfs_f00_two.xml
-parm/post/postcntrl_gfs_flux.xml
-parm/post/postcntrl_gfs_flux_f00.xml
-parm/post/postcntrl_gfs_goes.xml
-parm/post/postcntrl_gfs_goes.xml-new
-parm/post/postcntrl_gfs_two.xml
-parm/post/postcntrl_gfs_wafs.xml
-parm/post/postcntrl_gfs_wafs_anl.xml
-parm/post/postxconfig-NT-GEFS-ANL.txt
-parm/post/postxconfig-NT-GEFS-F00.txt
-parm/post/postxconfig-NT-GEFS-F00-aerosol.txt
-parm/post/postxconfig-NT-GEFS-WAFS.txt
-parm/post/postxconfig-NT-GEFS-aerosol.txt
-parm/post/postxconfig-NT-GEFS.txt
-parm/post/postxconfig-NT-GFS-ANL.txt
-parm/post/postxconfig-NT-GFS-F00-TWO.txt
-parm/post/postxconfig-NT-GFS-F00.txt
-parm/post/postxconfig-NT-GFS-FLUX-F00.txt
-parm/post/postxconfig-NT-GFS-FLUX.txt
-parm/post/postxconfig-NT-GFS-GOES.txt
-parm/post/postxconfig-NT-GFS-TWO.txt
-parm/post/postxconfig-NT-GFS-WAFS-ANL.txt
-parm/post/postxconfig-NT-GFS-WAFS.txt
-parm/post/postxconfig-NT-GFS.txt
-parm/post/postxconfig-NT-gefs-aerosol.txt
-parm/post/postxconfig-NT-gefs-chem.txt
+parm/post/gfs
+parm/post/gefs
 parm/post/ocean.csv
 parm/post/ice.csv
 parm/post/ocnicepost.nml.jinja2
 parm/ufs/noahmptable.tbl
 parm/ufs/model_configure.IN
-parm/ufs/model_configure_nest.IN
+parm/ufs/input_global_nest.nml.IN
 parm/ufs/MOM_input_*.IN
 parm/ufs/MOM6_data_table.IN
 parm/ufs/ice_in.IN
 parm/ufs/ufs.configure.*.IN
+parm/ufs/post_itag_gfs
 parm/wafs
 
 # Ignore sorc and logs folders from externals
@@ -164,6 +131,14 @@ scripts/exemcsfc_global_sfc_prep.sh
 scripts/exgdas_global_marine_analysis_ecen.py
 scripts/exglobal_prep_ocean_obs.py
 # ush symlinks
+ush/bufr2ioda_insitu_profile_argo.py
+ush/bufr2ioda_insitu_profile_bathy.py
+ush/bufr2ioda_insitu_profile_glider.py
+ush/bufr2ioda_insitu_profile_marinemammal.py
+ush/bufr2ioda_insitu_profile_tesac.py
+ush/bufr2ioda_insitu_profile_xbtctd.py
+ush/bufr2ioda_insitu_surface_altkob.py
+ush/bufr2ioda_insitu_surface_trkob.py
 ush/chgres_cube.sh
 ush/emcsfc_ice_blend.sh
 ush/emcsfc_snow.sh
@@ -174,6 +149,8 @@ ush/fv3gfs_make_grid.sh
 ush/fv3gfs_make_orog.sh
 ush/gen_bufr2ioda_json.py
 ush/gen_bufr2ioda_yaml.py
+ush/bufr2ioda_insitu_profile*.py
+ush/bufr2ioda_insitu_surface*.py
 ush/global_chgres.sh
 ush/global_chgres_driver.sh
 ush/global_cycle.sh
@@ -188,6 +165,7 @@ ush/month_name.sh
 ush/imsfv3_scf2ioda.py
 ush/atparse.bash
 ush/run_bufr2ioda.py
+ush/bufr2ioda_insitu*
 
 # version files
 versions/build.ver

.gitmodules

@@ -26,11 +26,3 @@
 [submodule "sorc/gsi_monitor.fd"]
   path = sorc/gsi_monitor.fd
   url = https://github.com/NOAA-EMC/GSI-Monitor.git
-[submodule "sorc/upp.fd"]
-  path = sorc/upp.fd
-  url = https://github.com/NOAA-EMC/UPP.git
-  ignore = dirty
-[submodule "sorc/jcb"]
-  path = sorc/jcb
-  url = https://github.com/noaa-emc/jcb
-  fetchRecurseSubmodules = false