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Fix paths for refactored prepocnobs task #2504

Merged
merged 6 commits into from
Apr 18, 2024
Merged

Fix paths for refactored prepocnobs task #2504

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31e3bad
path tweaks
AndrewEichmann-NOAA Apr 18, 2024
76b0d5b
comment correction
AndrewEichmann-NOAA Apr 18, 2024
3de6699
Merge branch 'develop' into bugfix/more_prepocnobs
AndrewEichmann-NOAA Apr 18, 2024
d382416
Update jobs/JGLOBAL_PREP_OCEAN_OBS
AndrewEichmann-NOAA Apr 18, 2024
3405a44
review suggestions
AndrewEichmann-NOAA Apr 18, 2024
1abeb4f
Update jobs/rocoto/prepoceanobs.sh
AndrewEichmann-NOAA Apr 18, 2024
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5 changes: 1 addition & 4 deletions jobs/JGLOBAL_PREP_OCEAN_OBS
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Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,10 @@ YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COMOUT_OBS:COM_OBS_TMPL
# Begin JOB SPECIFIC work
##############################################

# Add prep_marine_obs.py to PYTHONPATH
export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush:${PYTHONPATH}

###############################################################
# Run relevant script

EXSCRIPT=${GDASPREPOCNOBSPY:-${USHgfs}/exglobal_prep_ocean_obs.py}
EXSCRIPT=${GDASPREPOCNOBSPY:-${SCRgfs}/exglobal_prep_ocean_obs.py}
${EXSCRIPT}
status=$?
[[ ${status} -ne 0 ]] && exit "${status}"
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5 changes: 5 additions & 0 deletions jobs/rocoto/prepoceanobs.sh
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Expand Up @@ -12,6 +12,11 @@ status=$?
export job="prepoceanobs"
export jobid="${job}.$$"

###############################################################
# setup python path for class defs and utils

PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${HOMEgfs}/ush"

###############################################################
# Execute the JJOB
"${HOMEgfs}"/jobs/JGLOBAL_PREP_OCEAN_OBS
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1 change: 1 addition & 0 deletions sorc/link_workflow.sh
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Expand Up @@ -231,6 +231,7 @@ fi
#------------------------------
if [[ -d "${HOMEgfs}/sorc/gdas.cd/build" ]]; then
cd "${HOMEgfs}/ush" || exit 1
${LINK_OR_COPY} "${HOMEgfs}/sorc/gdas.cd/ush/soca" .
${LINK_OR_COPY} "${HOMEgfs}/sorc/gdas.cd/ush/ufsda" .
${LINK_OR_COPY} "${HOMEgfs}/sorc/gdas.cd/ush/jediinc2fv3.py" .
${LINK_OR_COPY} "${HOMEgfs}/sorc/gdas.cd/ush/ioda/bufr2ioda/gen_bufr2ioda_json.py" .
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