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Fixes GSI monitor undefined and error exits
After moving the GSI monitor scripts to workflow, several of the scripts would fail because set -eu is on, either due to undefined variables or trying to operate on non-existent files. This corrects some of those issues. Some of the non-existent files were globs, for these the bash built-in `compgen -G` is used to check if it resolves to any files. Refs: #967
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