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sync with head of NOAA-EMC UPP develop #845

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merged 25 commits into from
Aug 23, 2024
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b98442d
point to number-concentration branch of upp
SamuelTrahanNOAA Jun 12, 2024
be274cc
update upp hash
SamuelTrahanNOAA Jun 13, 2024
9a8e95f
send CCPP ebu_smoke to UPP ebb
SamuelTrahanNOAA Jun 13, 2024
eaef8c8
upp: remove GSD_NC synonyms and rename GSD_NC fields instead
SamuelTrahanNOAA Jun 13, 2024
aa6ac9c
update upp hash
SamuelTrahanNOAA Jun 13, 2024
3cde3d0
upp: correct pressure levels for hafs-ar postxconfig files
SamuelTrahanNOAA Jun 14, 2024
ee09cbe
bugfix: fixed_sfc2_type defaults to fixed_sfc1_type
SamuelTrahanNOAA Jun 17, 2024
61bb95a
merge upp upstream/develop to branch
SamuelTrahanNOAA Jun 17, 2024
c6f6927
update upp hash
SamuelTrahanNOAA Jun 19, 2024
5ec9abc
point to authoritative upp
SamuelTrahanNOAA Jun 20, 2024
4a7724e
Update upp to the latest harsh; Sync more changes from offline interf…
WenMeng-NOAA Jul 4, 2024
4456e69
Merge pull request #4 from WenMeng-NOAA/upp_update_wen
SamuelTrahanNOAA Jul 5, 2024
fdc8bc7
Merge remote-tracking branch 'upstream/develop' into number-concentra…
SamuelTrahanNOAA Jul 5, 2024
386efeb
Merge remote-tracking branch 'upstream/develop' into number-concentra…
SamuelTrahanNOAA Jul 11, 2024
60f2082
update upp hash
SamuelTrahanNOAA Jul 11, 2024
c618178
Merge remote-tracking branch 'upstream/develop' into number-concentra…
SamuelTrahanNOAA Jul 18, 2024
2f94bf1
Add aerosol fix from Li Pan.
WenMeng-NOAA Jul 19, 2024
337212c
Merge pull request #5 from WenMeng-NOAA/upp_aerosol_fix
SamuelTrahanNOAA Jul 19, 2024
c994c1d
Merge remote-tracking branch 'upstream/develop' into number-concentra…
SamuelTrahanNOAA Aug 8, 2024
29e8d77
update to head of UPP develop
SamuelTrahanNOAA Aug 8, 2024
dd489c1
Merge remote-tracking branch 'upstream/develop' into number-concentra…
SamuelTrahanNOAA Aug 13, 2024
d1d49d8
update to latest upp
SamuelTrahanNOAA Aug 14, 2024
5648c03
update spack package list
SamuelTrahanNOAA Aug 16, 2024
41261b7
try2: update spack package list; remove duplicates and sort
SamuelTrahanNOAA Aug 16, 2024
d352926
spack.yaml: remove unneeded libraries & sync versions with ufs-weathe…
SamuelTrahanNOAA Aug 16, 2024
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4 changes: 2 additions & 2 deletions .gitmodules
Original file line number Diff line number Diff line change
Expand Up @@ -12,5 +12,5 @@
branch = ufs/dev
[submodule "upp"]
path = upp
url = https://github.com/NOAA-EMC/UPP
branch = develop
url = https://github.com/SamuelTrahanNOAA/UPP
branch = number-concentration
28 changes: 15 additions & 13 deletions io/post_fv3.F90
Original file line number Diff line number Diff line change
Expand Up @@ -505,7 +505,7 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
!
use esmf
use vrbls4d, only: dust, smoke, fv3dust, coarsepm, SALT, SUSO, SOOT, &
WASO,no3,nh4, PP25, PP10
WASO,no3,nh4, PP25, PP10, ebb
use vrbls3d, only: t, q, uh, vh, wh, alpint, dpres, zint, zmid, o3, &
qqr, qqs, cwm, qqi, qqw, qqg, omga, cfr, pmid, &
q2, rlwtt, rswtt, tcucn, tcucns, train, el_pbl, &
Expand Down Expand Up @@ -546,7 +546,7 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
sfcvxi, t10m, t10avg, psfcavg, akhsavg, akmsavg, &
albedo, tg, prate_max, pwat, snow_acm, snow_bkt, &
acgraup, graup_bucket, acfrain, frzrn_bucket, &
ltg1_max, ltg2_max, ltg3_max, ebb, hwp, &
ltg1_max, ltg2_max, ltg3_max, hwp, &
aod550,du_aod550,ss_aod550,su_aod550,oc_aod550, &
bc_aod550,maod, &
dustpm10, dustcb, bccb, occb, sulfcb, sscb, &
Expand Down Expand Up @@ -1007,17 +1007,6 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
enddo
endif

! biomass burning emissions
if(trim(fieldname)=='ebb_smoke_hr') then
!$omp parallel do default(none) private(i,j) shared(jsta,jend,ista,iend,ebb,arrayr42d,fillValue,spval)
do j=jsta,jend
do i=ista, iend
ebb(i,j)=arrayr42d(i,j)
if(abs(arrayr42d(i,j)-fillValue) < small) ebb(i,j)=spval
enddo
enddo
endif

! wildfire potential
if(trim(fieldname)=='hwp') then
!$omp parallel do default(none) private(i,j) shared(jsta,jend,ista,iend,hwp,arrayr42d,fillValue,spval)
Expand Down Expand Up @@ -3452,6 +3441,19 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
enddo
endif

! biomass burning emissions
if(trim(fieldname)=='ebu_smoke') then
!$omp parallel do default(none) private(i,j,l) shared(jsta,jend,ista,iend,ebb,arrayr43d,fillValue,spval,lm)
do l=1,lm
do j=jsta,jend
do i=ista, iend
ebb(i,j,l,1)=arrayr43d(i,j,l)
if(abs(arrayr43d(i,j,l)-fillValue) < small) ebb(i,j,l,1)=spval
enddo
enddo
enddo
endif

! model level T
if(trim(fieldname)=='tmp') then
!$omp parallel do default(none) private(i,j,l) shared(lm,jsta,jend,ista,iend,t,arrayr43d,fillvalue,spval)
Expand Down
2 changes: 1 addition & 1 deletion upp
Submodule upp updated 71 files
+35 −8 ci/rt.sh
+1 −1 ci/spack.yaml
+153 −61 doc/UserGuide/BuildingRunningTesting/InputsOutputs.rst
+2 −2 doc/UserGuide/Reference/Glossary.rst
+2 −2 doc/UserGuide/requirements.txt
+4 −7 modulefiles/gaea.lua
+1 −1 modulefiles/hera.lua
+3 −3 modulefiles/hercules.lua
+1 −1 modulefiles/jet.lua
+23 −0 modulefiles/noaacloud.lua
+1 −1 modulefiles/orion.lua
+1 −1 modulefiles/s4.lua
+1 −2 modulefiles/upp_common.lua
+4 −1 modulefiles/wcoss2.lua
+142 −102 parm/POST-XML-Library-NT.pl
+4 −4 parm/README.make_flatfile
+3 −3 parm/hrrr_postcntrl.xml
+8 −2 parm/makefile
+2 −2 parm/nam_post_avblflds.xml
+2 −2 parm/ngac_post_avblflds.xml
+167 −21 parm/post_avblflds.xml
+3 −3 parm/post_avblflds_raphrrr.xml
+762 −0 parm/postcntrl_hafs_ar_nosat.xml
+748 −0 parm/postcntrl_hafs_ar_nosat_l65.xml
+125 −0 parm/postxconfig-NT-AQM.txt
+826 −1 parm/postxconfig-NT-GEFS-F00-aerosol.txt
+655 −0 parm/postxconfig-NT-GEFS-F00.txt
+1,047 −2 parm/postxconfig-NT-GEFS-aerosol.txt
+876 −1 parm/postxconfig-NT-GEFS.txt
+460 −0 parm/postxconfig-NT-GFS-ANL.txt
+1,006 −1 parm/postxconfig-NT-GFS-F00-TWO.txt
+771 −1 parm/postxconfig-NT-GFS-F00.txt
+235 −0 parm/postxconfig-NT-GFS-FLUX-F00.txt
+560 −0 parm/postxconfig-NT-GFS-FLUX.txt
+20 −0 parm/postxconfig-NT-GFS-GOES.txt
+1,583 −3 parm/postxconfig-NT-GFS-TWO.txt
+1,021 −1 parm/postxconfig-NT-GFS.txt
+140 −0 parm/postxconfig-NT-NGAC.txt
+3,005 −5 parm/postxconfig-NT-NMM.txt
+550 −0 parm/postxconfig-NT-SFS.txt
+235 −0 parm/postxconfig-NT-UFS-aerosol-F00.txt
+255 −0 parm/postxconfig-NT-UFS-aerosol.txt
+460 −0 parm/postxconfig-NT-hafs.txt
+4,554 −0 parm/postxconfig-NT-hafs_ar_nosat.txt
+4,554 −0 parm/postxconfig-NT-hafs_ar_nosat_l65.txt
+420 −0 parm/postxconfig-NT-hafs_nosat.txt
+40 −0 parm/postxconfig-NT-hafs_sat.txt
+949 −4 parm/postxconfig-NT-hrrr.txt
+1,360 −5 parm/postxconfig-NT-rap.txt
+3,082 −951 parm/postxconfig-NT-rrfs.txt
+1,740 −0 parm/postxconfig-NT-rrfs_subh.txt
+3 −3 parm/rap_postcntrl.xml
+13 −93 parm/rrfs_postcntrl.xml
+281 −0 parm/rrfs_postcntrl_subh.xml
+8 −2 sorc/ncep_post.fd/ALLOCATE_ALL.f
+11 −1 sorc/ncep_post.fd/CALPW.f
+66 −45 sorc/ncep_post.fd/CLDRAD.f
+3 −0 sorc/ncep_post.fd/DEALLOCATE.f
+4 −0 sorc/ncep_post.fd/FILL_PSETFLD.f
+68 −48 sorc/ncep_post.fd/INITPOST_NETCDF.f
+130 −6 sorc/ncep_post.fd/MDL2P.f
+29 −1 sorc/ncep_post.fd/MDLFLD.f
+169 −18 sorc/ncep_post.fd/SURFCE.f
+3 −2 sorc/ncep_post.fd/VRBLS2D_mod.f
+1 −0 sorc/ncep_post.fd/VRBLS4D_mod.f
+74 −5 sorc/ncep_post.fd/grib2_module.f
+1 −1 sorc/ncep_post.fd/post_gtg.fd
+11 −0 sorc/ncep_post.fd/xml_perl_data.f
+89 −53 tests/logs/rt.log.HERA
+69 −0 tests/logs/rt.log.HERCULES
+69 −53 tests/logs/rt.log.ORION
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