Add obs yamls for v3 (#441)

* a few obs yaml converted to v3 * sst_drifter, amsr2 icec NH,SH --------- Co-authored-by: Guillaume Vernieres <guillaume.vernieres@noaa.gov>
NOAA-EMC · Apr 19, 2023 · 127d0c9 · 127d0c9
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commit 127d0c9
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Showing 22 changed files with 326 additions and 173 deletions.
diff --git a/parm/soca/obs/config/adt_3a_egm2008.yaml b/parm/soca/obs/config/adt_3a_egm2008.yaml
@@ -8,7 +8,7 @@ obs space:
     engine:
       type: H5File
       obsfile: !ENV ${DATA}/diags/adt_3a_egm2008.${PDY}${cyc}.nc4
-  simulated variables: [absolute_dynamic_topography]
+  simulated variables: [absoluteDynamicTopography]
   io pool:
     max pool size: 1
 obs operator:
@@ -18,53 +18,53 @@ obs error:
 obs filters:
 - filter: Domain Check
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     minvalue: 0.9
 - filter: Domain Check
   where:
-  - variable: { name: sea_surface_temperature@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_surface_temperature}
     minvalue: 15.0
 - filter: Background Check
   absolute threshold: 0.2
 - filter: Domain Check
   where:
-  - variable: {name: sea_floor_depth_below_sea_surface@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
     minvalue: 500
 - filter: Perform Action
   action:
     name: assign error
     error function:
-      name: LinearCombination@ObsFunction
+      name: ObsFunction/LinearCombination
       options:
-        variables: [mesoscale_representation_error@GeoVaLs,
-                    absolute_dynamic_topography@ObsError]
+        variables: [GeoVaLs/mesoscale_representation_error,
+                    ObsError/absoluteDynamicTopography]
         coefs: [0.1,
                 0.5]
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: -125
     maxvalue: -90
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: 60
     maxvalue: 110
 - filter: Domain Check
   where:
-  - variable: { name: sea_ice_area_fraction@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_ice_area_fraction}
     maxvalue: 0.00001
 - filter: Domain Check
   where:
-  - variable: {name: distance_from_coast@GeoVaLs}
+  - variable: {name: GeoVaLs/distance_from_coast}
     minvalue: 100e3
diff --git a/parm/soca/obs/config/adt_3b_egm2008.yaml b/parm/soca/obs/config/adt_3b_egm2008.yaml
@@ -8,7 +8,7 @@ obs space:
     engine:
       type: H5File
       obsfile: !ENV ${DATA}/diags/adt_3b_egm2008.${PDY}${cyc}.nc4
-  simulated variables: [absolute_dynamic_topography]
+  simulated variables: [absoluteDynamicTopography]
   io pool:
     max pool size: 1
 obs operator:
@@ -18,53 +18,53 @@ obs error:
 obs filters:
 - filter: Domain Check
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     minvalue: 0.9
 - filter: Domain Check
   where:
-  - variable: { name: sea_surface_temperature@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_surface_temperature}
     minvalue: 15.0
 - filter: Background Check
   absolute threshold: 0.2
 - filter: Domain Check
   where:
-  - variable: {name: sea_floor_depth_below_sea_surface@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
     minvalue: 500
 - filter: Perform Action
   action:
     name: assign error
     error function:
-      name: LinearCombination@ObsFunction
+      name: ObsFunction/LinearCombination
       options:
-        variables: [mesoscale_representation_error@GeoVaLs,
-                    absolute_dynamic_topography@ObsError]
+        variables: [GeoVaLs/mesoscale_representation_error,
+                    ObsError/absoluteDynamicTopography]
         coefs: [0.1,
                 0.5]
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: -125
     maxvalue: -90
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: 60
     maxvalue: 110
 - filter: Domain Check
   where:
-  - variable: { name: sea_ice_area_fraction@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_ice_area_fraction}
     maxvalue: 0.00001
 - filter: Domain Check
   where:
-  - variable: {name: distance_from_coast@GeoVaLs}
+  - variable: {name: GeoVaLs/distance_from_coast}
     minvalue: 100e3
diff --git a/parm/soca/obs/config/adt_6a_egm2008.yaml b/parm/soca/obs/config/adt_6a_egm2008.yaml
@@ -8,7 +8,7 @@ obs space:
     engine:
       type: H5File
       obsfile: !ENV ${DATA}/diags/adt_6a_egm2008.${PDY}${cyc}.nc4
-  simulated variables: [absolute_dynamic_topography]
+  simulated variables: [absoluteDynamicTopography]
   io pool:
     max pool size: 1
 obs operator:
@@ -18,53 +18,53 @@ obs error:
 obs filters:
 - filter: Domain Check
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     minvalue: 0.9
 - filter: Domain Check
   where:
-  - variable: { name: sea_surface_temperature@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_surface_temperature}
     minvalue: 15.0
 - filter: Background Check
   absolute threshold: 0.2
 - filter: Domain Check
   where:
-  - variable: {name: sea_floor_depth_below_sea_surface@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
     minvalue: 500
 - filter: Perform Action
   action:
     name: assign error
     error function:
-      name: LinearCombination@ObsFunction
+      name: ObsFunction/LinearCombination
       options:
-        variables: [mesoscale_representation_error@GeoVaLs,
-                    absolute_dynamic_topography@ObsError]
+        variables: [GeoVaLs/mesoscale_representation_error,
+                    ObsError/absoluteDynamicTopography]
         coefs: [0.1,
                 0.5]
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: -125
     maxvalue: -90
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: 60
     maxvalue: 110
 - filter: Domain Check
   where:
-  - variable: { name: sea_ice_area_fraction@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_ice_area_fraction}
     maxvalue: 0.00001
 - filter: Domain Check
   where:
-  - variable: {name: distance_from_coast@GeoVaLs}
+  - variable: {name: GeoVaLs/distance_from_coast}
     minvalue: 100e3
diff --git a/parm/soca/obs/config/adt_c2_egm2008.yaml b/parm/soca/obs/config/adt_c2_egm2008.yaml
@@ -8,7 +8,7 @@ obs space:
     engine:
       type: H5File
       obsfile: !ENV ${DATA}/diags/adt_c2_egm2008.${PDY}${cyc}.nc4
-  simulated variables: [absolute_dynamic_topography]
+  simulated variables: [absoluteDynamicTopography]
   io pool:
     max pool size: 1
 obs operator:
@@ -18,49 +18,53 @@ obs error:
 obs filters:
 - filter: Domain Check
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     minvalue: 0.9
 - filter: Domain Check
   where:
-  - variable: { name: sea_surface_temperature@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_surface_temperature}
     minvalue: 15.0
 - filter: Background Check
   absolute threshold: 0.2
 - filter: Domain Check
   where:
-  - variable: {name: sea_floor_depth_below_sea_surface@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_floor_depth_below_sea_surface}
     minvalue: 500
 - filter: Perform Action
   action:
     name: assign error
     error function:
-      name: LinearCombination@ObsFunction
+      name: ObsFunction/LinearCombination
       options:
-        variables: [mesoscale_representation_error@GeoVaLs,
-                    absolute_dynamic_topography@ObsError]
+        variables: [GeoVaLs/mesoscale_representation_error,
+                    ObsError/absoluteDynamicTopography]
         coefs: [0.1,
                 0.5]
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: -125
     maxvalue: -90
 - filter: BlackList
   where:
   - variable:
-      name: latitude@MetaData
+      name: MetaData/latitude
     minvalue: -65
     maxvalue: -30
   - variable:
-      name: longitude@MetaData
+      name: MetaData/longitude
     minvalue: 60
     maxvalue: 110
 - filter: Domain Check
   where:
-  - variable: { name: sea_ice_area_fraction@GeoVaLs}
+  - variable: { name: GeoVaLs/sea_ice_area_fraction}
     maxvalue: 0.00001
+- filter: Domain Check
+  where:
+  - variable: {name: GeoVaLs/distance_from_coast}
+    minvalue: 100e3
diff --git a/parm/soca/obs/config/adt_coperl4.yaml b/parm/soca/obs/config/adt_coperl4.yaml
@@ -8,7 +8,7 @@ obs space:
     engine:
       type: H5File
       obsfile: !ENV ${DATA}/diags/adt_coperl4.${PDY}${cyc}.nc4
-  simulated variables: [absolute_dynamic_topography]
+  simulated variables: [absoluteDynamicTopography]
   io pool:
     max pool size: 1
 obs operator:
@@ -18,21 +18,21 @@ obs error:
 obs filters:
 - filter: Domain Check
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     minvalue: 0.9
 # Reject obs where ocean fraction is < 90%
 - filter: Domain Check
   action:
     name: reject
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     minvalue: 0.9
 # Passivate obs where ocean fraction is > 90%
 - filter: Domain Check
   action:
     name: passivate
   where:
-  - variable: {name: sea_area_fraction@GeoVaLs}
+  - variable: {name: GeoVaLs/sea_area_fraction}
     maxvalue: 0.9
 # Reject obs outside of [-4.0m,4.0m]
 - filter: Bounds Check
@@ -42,5 +42,5 @@ obs filters:
   maxvalue: 4.0
 - filter: Domain Check
   where:
-  - variable: {name: distance_from_coast@GeoVaLs}
+  - variable: {name: GeoVaLs/distance_from_coast}
     minvalue: 100e3