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Bring EMC fms_mixedmode up to date with GFDL main #15

Merged
merged 47 commits into from
Apr 15, 2022
Merged

Bring EMC fms_mixedmode up to date with GFDL main #15

merged 47 commits into from
Apr 15, 2022

Commits on Nov 4, 2021

  1. Update to the top of main branch of NOAA-GFDL/FMS

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Nov 4, 2021
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Commits on Dec 20, 2021

  1. get_unit warning now only prints on root_pe (NOAA-GFDL#872) 

    Co-authored-by: Eric Stofferahn <Eric.Stofferahn@noaa.gov>
    @rem1776
    rem1776 and Eric Stofferahn authored Dec 20, 2021
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Commits on Dec 23, 2021

  1. Update changelog, version numbers and build info (NOAA-GFDL#873) 

    Co-authored-by: rem1776 <Ryan.Mulhall@lscamd50-d.gfdl.noaa.gov>
    @rem1776
    rem1776 and rem1776 authored Dec 23, 2021
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Commits on Jan 4, 2022

  1. chore: Change version number to next development version (NOAA-GFDL#874)

    @rem1776
    rem1776 authored Jan 4, 2022
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Commits on Jan 7, 2022

  1. CI: Update build action for yaml parser (NOAA-GFDL#871) 

    Update build actions
Change images to organization's repo and fix mixed mode parser test failure
    @rem1776
    rem1776 authored Jan 7, 2022
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Commits on Jan 12, 2022

  1. test(parser): Change real comparison value to double (NOAA-GFDL#886) 

    Co-authored-by: rem1776 <Ryan.Mulhall@lscamd50-d.gfdl.noaa.gov>
    @rem1776
    rem1776 and rem1776 authored Jan 12, 2022
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  2. Merge remote-tracking branch 'emc/fms_mixedmode' into fms_mixedmode

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 12, 2022
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  3. Make 'unsupported kind' error messages more descriptive. Change autho… 

    …r of constants4.F90
    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 12, 2022
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  4. Add doxygen comment to valid_types in sat_vapor_pres/sat_vapor_pres_k… 

    ….F90
    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 12, 2022
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Commits on Jan 13, 2022

  1. Modify codes for r8-r4 conversion to remove compiler warnings

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 13, 2022
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  2. Merge remote-tracking branch 'emc/fms_mixedmode' into fms_mixedmode

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 13, 2022
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Commits on Jan 14, 2022

  1. Merge remote-tracking branch 'emc/fms_mixedmode' into fms_mixedmode

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 14, 2022
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  2. Remove OVERLOAD_R8 directives regarding send_data_*d_r8 subroutines

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 14, 2022
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  3. Add Doxygen comments to constants4.F90

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Jan 14, 2022
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Commits on Jan 20, 2022

  1. Updates AM4 regression test suite to run intel 21 only on PW (NOAA-GF… 

    …DL#893)
    @thomas-robinson
    thomas-robinson authored Jan 20, 2022
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Commits on Feb 3, 2022

  1. feat: emc changes for mixedmode (NOAA-GFDL#857) (NOAA-GFDL#898) 

    * Change send_data interface and any necessary routines for mixed real precision support
* Adds an r4 size constants file

BREAKING CHANGE: changes some argument types in diag_manager, tracer_manager, sat_vapor_pres, and time_manager from real to class(*)

Co-authored-by: Minsuk Ji <57227195+MinsukJi-NOAA@users.noreply.github.com>
    @rem1776 @MinsukJi-NOAA
    rem1776 and MinsukJi-NOAA authored Feb 3, 2022
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Commits on Feb 4, 2022

  1. feat: adds option to override (ignore) checksum test when reading res… 

    …tarts (NOAA-GFDL#889)

* update to fms2_io to allow reads to ignore embedded checksums on a fileobj basis
* added fms2_io test cases for the ignore_checksum option to restart reads
tests the domain, domain_wrap, and bc restart options
    @bensonr
    bensonr authored Feb 4, 2022
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Commits on Feb 9, 2022

  1. docs: add CI information file (NOAA-GFDL#899)

    @rem1776
    rem1776 authored Feb 9, 2022
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Commits on Feb 10, 2022

  1. test: Adds check_nml_error after reading a namelist, so it could cras… 

    …h only as expected (NOAA-GFDL#904)
    @uramirez8707
    uramirez8707 authored Feb 10, 2022
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Commits on Feb 17, 2022

  1. Revert "feat: emc changes for mixedmode (NOAA-GFDL#857) (NOAA-GFDL#898)… 

    …" (NOAA-GFDL#914)

This reverts commit 516a5ef.
    @rem1776
    rem1776 authored Feb 17, 2022
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Commits on Feb 24, 2022

  1. fix: clean up unused/uninitialized variables and other warnings (NOAA… 

    …-GFDL#859)

Remove unused variables throughout and changes/removals for other warnings such as uninitialized values and implicit casts
    @rem1776
    rem1776 authored Feb 24, 2022
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Commits on Feb 25, 2022

  1. docs: update function style and branch names 

    * Changes master to main in CONTRIBUTING.md

* Claifies function return documentation in CODE_STYLE.md
    @thomas-robinson
    thomas-robinson authored Feb 25, 2022
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Commits on Mar 1, 2022

  1. feat: adds support for logical variables in the yaml parser (NOAA-GFD… 

    …L#907)

* Adds support for logical variables in the yaml parser

* correctly determines if a string is true or false
    @uramirez8707
    uramirez8707 authored Mar 1, 2022
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  2. fix: add check for affinity to self-initialize and update test program ( 

    NOAA-GFDL#917)
    @bensonr
    bensonr authored Mar 1, 2022
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  3. fix: adds casts to class(*) calls to match doubles in C routines (NOA… 

    …A-GFDL#920)

Co-authored-by: rem1776 <Ryan.Mulhall@lscamd50-d.gfdl.noaa.gov>
    @rem1776
    rem1776 and rem1776 authored Mar 1, 2022
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  4. build: add intel code coverage build option to autotools (NOAA-GFDL#895)

    @rem1776
    rem1776 authored Mar 1, 2022
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  5. refactor: change to inclusive variable names (NOAA-GFDL#926)

    @thomas-robinson
    thomas-robinson authored Mar 1, 2022
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Commits on Mar 3, 2022

  1. feat: Allow maximum number of restart variables to be set at build ti… 

    …me (NOAA-GFDL#909)
    @rmontuoro
    rmontuoro authored Mar 3, 2022
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  2. fix: Fixes for linter action and code style (NOAA-GFDL#869)

    @rem1776
    rem1776 authored Mar 3, 2022
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Commits on Mar 4, 2022

  1. test: Test script updates and input tests (NOAA-GFDL#800) 

    Rewrites test script to use added testing shell functions
Adds previously skipped or removed unit tests and support for testing with input files

Co-authored-by: Seth Underwood <Seth.Underwood@noaa.gov>
Co-authored-by: Uriel Ramirez <uriel.ramirez@noaa.gov>
    @rem1776 @underwoo
    3 people authored Mar 4, 2022
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Commits on Mar 25, 2022

  1. chore: 2022.01 release changes (NOAA-GFDL#941)

    @rem1776
    rem1776 authored Mar 25, 2022
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Commits on Mar 29, 2022

  1. chore: change version number to next development version (NOAA-GFDL#945)

    @rem1776
    rem1776 authored Mar 29, 2022
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  2. Add option for position independent code (NOAA-GFDL#930)

    @mathomp4
    mathomp4 authored Mar 29, 2022
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  3. fix: document and change parameter names for grid versions (NOAA-GFDL… 

    …#918)
    @rem1776
    rem1776 authored Mar 29, 2022
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Commits on Mar 31, 2022

  1. fix: Moving empty and non-existent data table handling inside data_ov… 

    …erride (NOAA-GFDL#933)

Enables the processing of an empty or non-existent data_table or data_table.yaml from within data_override, so that any routine can call data_override_init without worry
    @GFDL-Eric
    GFDL-Eric authored Mar 31, 2022
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Commits on Apr 1, 2022

  1. fix: Removal of internal FMS use of fms_io and mpp_io (NOAA-GFDL#928)

    @GFDL-Eric
    GFDL-Eric authored Apr 1, 2022
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Commits on Apr 4, 2022

  1. fix: mpp changes to solve compile issues with serial builds (NOAA-GFD… 

    …L#949)
    @rem1776
    rem1776 authored Apr 4, 2022
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Commits on Apr 6, 2022

  1. feat: adds build option for compiling with different sets of constants ( 

    NOAA-GFDL#929)
    @bensonr
    bensonr authored Apr 6, 2022
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  2. feat: add and aggregate mpp_chksum unit tests (NOAA-GFDL#946)

    @rem1776
    rem1776 authored Apr 6, 2022
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Commits on Apr 7, 2022

  1. feat: add module for string utility routines (NOAA-GFDL#911) 

    Adds module and accompanying test for common string operations
    @uramirez8707
    uramirez8707 authored Apr 7, 2022
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Commits on Apr 8, 2022

  1. revert: reinstated the mpp_io routines and put them at the end for fu… 

    …ture elimination. (NOAA-GFDL#952)
    @GFDL-Eric
    GFDL-Eric authored Apr 8, 2022
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Commits on Apr 11, 2022

  1. fix: add back in small_fac parameter to constants .h files (NOAA-GFDL… 

    …#954)
    @bensonr
    bensonr authored Apr 11, 2022
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Commits on Apr 14, 2022

  1. fix: root pe bug with fms2_io::flush_file (NOAA-GFDL#958)

    @uramirez8707
    uramirez8707 authored Apr 14, 2022
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  2. fix: clean up string routines for fms_string_utils_mod (NOAA-GFDL#953)

    @uramirez8707
    uramirez8707 authored Apr 14, 2022
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  3. Merge remote-tracking branch 'emc/fms_mixedmode' into fms_mixedmode

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 14, 2022
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  4. Bring EMC fms_mixedmode up to date with GFDL main

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 14, 2022
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Commits on Apr 15, 2022

  1. Make changes to lines with more than 120 columns

    @MinsukJi-NOAA
    MinsukJi-NOAA committed Apr 15, 2022
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