remove FoX depdencies (#17)

* remove FoX depdencies * remove fox submodule * update streamfilename Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com>
NOAA-EMC · Apr 14, 2021 · 69a3a61 · 69a3a61
1 parent c4c30bd
commit 69a3a61
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Showing 11 changed files with 259 additions and 40 deletions.
diff --git a/.gitmodules b/.gitmodules
@@ -1,3 +0,0 @@
-[submodule "fox"]
-	path = fox
-	url = https://github.com/ESMCI/fox.git

diff --git a/datm/atm_comp_nuopc.F90 b/datm/atm_comp_nuopc.F90
@@ -26,7 +26,7 @@ module atm_comp_nuopc
   use shr_cal_mod      , only : shr_cal_ymd2date, shr_cal_ymd2julian, shr_cal_date2julian
   use shr_mpi_mod      , only : shr_mpi_bcast
   use dshr_methods_mod , only : dshr_state_diagnose, chkerr, memcheck
-  use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_init_from_xml, shr_strdata_advance
+  use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_init_from_config, shr_strdata_advance
   use dshr_strdata_mod , only : shr_strdata_get_stream_pointer, shr_strdata_setOrbs
   use dshr_mod         , only : dshr_model_initphase, dshr_init
   use dshr_mod         , only : dshr_state_setscalar, dshr_set_runclock, dshr_log_clock_advance
@@ -111,7 +111,7 @@ module atm_comp_nuopc
 
   ! datm_in namelist input
   character(CL)                :: nlfilename = nullstr                ! filename to obtain namelist info from
-  character(CL)                :: xmlfilename = nullstr               ! filename to obtain namelist info from
+  character(CL)                :: streamfilename = nullstr            ! filename to obtain stream info from
   character(CL)                :: dataMode = nullstr                  ! flags physics options wrt input data
   character(CL)                :: model_meshfile = nullstr            ! full pathname to model meshfile
   character(CL)                :: model_maskfile = nullstr            ! full pathname to obtain mask from
@@ -392,8 +392,11 @@ subroutine InitializeRealize(gcomp, importState, exportState, clock, rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
     ! Initialize stream data type
-    xmlfilename = 'datm.streams'//trim(inst_suffix)//'.xml'
-    call shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, 'ATM', logunit, rc=rc)
+    streamfilename = 'datm.streams'//trim(inst_suffix)
+#ifndef DISABLE_FoX
+    streamfilename = trim(streamfilename)//'.xml'
+#endif
+    call shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, 'ATM', logunit, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
     call ESMF_TraceRegionExit('datm_strdata_init')
 

diff --git a/dice/ice_comp_nuopc.F90 b/dice/ice_comp_nuopc.F90
@@ -27,7 +27,7 @@ module ice_comp_nuopc
   use dshr_mod             , only : dshr_model_initphase, dshr_init, dshr_mesh_init
   use dshr_mod             , only : dshr_state_setscalar, dshr_set_runclock, dshr_log_clock_advance
   use dshr_methods_mod     , only : dshr_state_diagnose, chkerr, memcheck
-  use dshr_strdata_mod     , only : shr_strdata_type, shr_strdata_init_from_xml, shr_strdata_advance
+  use dshr_strdata_mod     , only : shr_strdata_type, shr_strdata_init_from_config, shr_strdata_advance
   use dshr_dfield_mod      , only : dfield_type, dshr_dfield_add, dshr_dfield_copy
   use dshr_fldlist_mod     , only : fldlist_type, dshr_fldlist_add, dshr_fldlist_realize
 
@@ -68,7 +68,7 @@ module ice_comp_nuopc
   character(*) , parameter     :: nullstr = 'null'
 
   ! dice_in namelist input
-  character(CL)                :: xmlfilename = nullstr               ! filename to obtain namelist info from
+  character(CL)                :: streamfilename = nullstr            ! filename to obtain stream info from
   character(CL)                :: nlfilename = nullstr                ! filename to obtain namelist info from
   character(CL)                :: dataMode                            ! flags physics options wrt input data
   character(CL)                :: model_meshfile = nullstr            ! full pathname to model meshfile
@@ -307,8 +307,11 @@ subroutine InitializeRealize(gcomp, importState, exportState, clock, rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
     ! Initialize stream data type
-    xmlfilename = 'dice.streams'//trim(inst_suffix)//'.xml'
-    call shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, 'ICE', logunit, rc=rc)
+    streamfilename = 'dice.streams'//trim(inst_suffix)
+#ifndef DISABLE_FoX
+    streamfilename = trim(streamfilename)//'.xml'
+#endif
+    call shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, 'ICE', logunit, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
     call ESMF_TraceRegionExit('dice_strdata_init')
 

diff --git a/dlnd/lnd_comp_nuopc.F90 b/dlnd/lnd_comp_nuopc.F90
@@ -24,7 +24,7 @@ module lnd_comp_nuopc
   use shr_mpi_mod       , only : shr_mpi_bcast
   use dshr_methods_mod  , only : dshr_state_getfldptr, dshr_state_diagnose, chkerr, memcheck
   use dshr_strdata_mod  , only : shr_strdata_type, shr_strdata_advance, shr_strdata_get_stream_domain
-  use dshr_strdata_mod  , only : shr_strdata_init_from_xml
+  use dshr_strdata_mod  , only : shr_strdata_init_from_config
   use dshr_mod          , only : dshr_model_initphase, dshr_init
   use dshr_mod          , only : dshr_state_setscalar, dshr_set_runclock, dshr_log_clock_advance
   use dshr_mod          , only : dshr_restart_read, dshr_restart_write, dshr_mesh_init
@@ -70,7 +70,7 @@ module lnd_comp_nuopc
   character(CL)            :: model_meshfile = nullstr            ! full pathname to model meshfile
   character(CL)            :: model_maskfile = nullstr            ! full pathname to obtain mask from
   character(CL)            :: model_createmesh_fromfile = nullstr ! full pathname to obtain mask from
-  character(CL)            :: xmlfilename                         ! filename to obtain stream info from
+  character(CL)            :: streamfilename                      ! filename to obtain stream info from
   character(CL)            :: nlfilename = nullstr                ! filename to obtain namelist info from
   logical                  :: force_prognostic_true = .false.     ! if true set prognostic true
   character(CL)            :: restfilm = nullstr                  ! model restart file namelist
@@ -287,8 +287,11 @@ subroutine InitializeRealize(gcomp, importState, exportState, clock, rc)
          model_mask, model_frac, restart_read, rc=rc)
 
     ! Initialize stream data type
-    xmlfilename = 'dlnd.streams'//trim(inst_suffix)//'.xml'
-    call shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, 'LND', logunit, rc=rc)
+    streamfilename = 'dlnd.streams'//trim(inst_suffix)
+#ifndef DISABLE_FoX
+    streamfilename = trim(streamfilename)'.xml'
+#endif
+    call shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, 'LND', logunit, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
     call ESMF_TraceRegionExit('dlnd_strdata_init')
 

diff --git a/docn/ocn_comp_nuopc.F90 b/docn/ocn_comp_nuopc.F90
@@ -23,7 +23,7 @@ module ocn_comp_nuopc
   use shr_cal_mod      , only : shr_cal_ymd2date
   use shr_mpi_mod      , only : shr_mpi_bcast
   use dshr_methods_mod , only : dshr_state_diagnose, chkerr, memcheck
-  use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_advance, shr_strdata_init_from_xml
+  use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_advance, shr_strdata_init_from_config
   use dshr_mod         , only : dshr_model_initphase, dshr_init, dshr_mesh_init
   use dshr_mod         , only : dshr_state_setscalar, dshr_set_runclock
   use dshr_dfield_mod  , only : dfield_type, dshr_dfield_add, dshr_dfield_copy
@@ -81,7 +81,7 @@ module ocn_comp_nuopc
   character(*) , parameter     :: nullstr = 'null'
 
   ! docn_in namelist input
-  character(CL)                :: xmlfilename = nullstr               ! filename to obtain namelist info from
+  character(CL)                :: streamfilename = nullstr            ! filename to obtain stream info from
   character(CL)                :: nlfilename = nullstr                ! filename to obtain namelist info from
   character(CL)                :: datamode = nullstr                  ! flags physics options wrt input data
   character(CL)                :: model_meshfile = nullstr            ! full pathname to model meshfile
@@ -329,8 +329,11 @@ subroutine InitializeRealize(gcomp, importState, exportState, clock, rc)
 
     ! Initialize stream data type if not aqua planet
     if (.not. aquaplanet) then
-       xmlfilename = trim(modelname)//'.streams'//trim(inst_suffix)//'.xml'
-       call shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, 'OCN', logunit, rc=rc)
+       streamfilename = trim(modelname)//'.streams'//trim(inst_suffix)
+#ifndef DISABLE_FoX
+       streamfilename = trim(streamfilename)//'.xml'
+#endif
+       call shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, 'OCN', logunit, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
     end if
     call ESMF_TraceRegionExit('docn_strdata_init')

diff --git a/drof/rof_comp_nuopc.F90 b/drof/rof_comp_nuopc.F90
@@ -25,7 +25,7 @@ module rof_comp_nuopc
   use shr_mpi_mod      , only : shr_mpi_bcast
   use dshr_methods_mod , only : dshr_state_getfldptr, dshr_state_diagnose, chkerr, memcheck
   use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_advance, shr_strdata_get_stream_domain
-  use dshr_strdata_mod , only : shr_strdata_init_from_xml
+  use dshr_strdata_mod , only : shr_strdata_init_from_config
   use dshr_mod         , only : dshr_model_initphase, dshr_init
   use dshr_mod         , only : dshr_state_setscalar, dshr_set_runclock
   use dshr_mod         , only : dshr_restart_read, dshr_restart_write, dshr_mesh_init
@@ -61,7 +61,7 @@ module rof_comp_nuopc
   character(CL)                :: case_name                           ! case name
   character(*) , parameter     :: nullstr = 'null'
                                                                       ! drof_in namelist input
-  character(CL)                :: xmlfilename = nullstr               ! filename to obtain namelist info from
+  character(CL)                :: streamfilename = nullstr            ! filename to obtain stream info from
   character(CL)                :: nlfilename = nullstr                ! filename to obtain namelist info from
   character(CL)                :: dataMode = nullstr                  ! flags physics options wrt input data
   character(CL)                :: model_meshfile = nullstr            ! full pathname to model meshfile
@@ -285,8 +285,11 @@ subroutine InitializeRealize(gcomp, importState, exportState, clock, rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
     ! Initialize stream data type
-    xmlfilename = 'drof.streams'//trim(inst_suffix)//'.xml'
-    call shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, 'ROF', logunit, rc=rc)
+    streamfilename = 'drof.streams'//trim(inst_suffix)
+#ifndef DISABLE_FOX
+    streamfilename = trim(streamfilename)//'.xml'
+#endif
+    call shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, 'ROF', logunit, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
     call ESMF_TraceRegionExit('drof_strdata_init')
 

diff --git a/dshr/dshr_mod.F90 b/dshr/dshr_mod.F90
@@ -41,7 +41,7 @@ module dshr_mod
 #ifdef CESMCOUPLED
   use shr_pio_mod      , only : shr_pio_getiosys, shr_pio_getiotype, shr_pio_getioformat
 #endif
-  use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_init_from_xml, SHR_STRDATA_GET_STREAM_COUNT
+  use dshr_strdata_mod , only : shr_strdata_type, SHR_STRDATA_GET_STREAM_COUNT
   use dshr_methods_mod , only : chkerr
   use pio
 

diff --git a/dwav/wav_comp_nuopc.F90 b/dwav/wav_comp_nuopc.F90
@@ -24,7 +24,7 @@ module wav_comp_nuopc
   use shr_mpi_mod      , only : shr_mpi_bcast
   use dshr_methods_mod , only : dshr_state_getfldptr, chkerr, memcheck, dshr_state_diagnose
   use dshr_strdata_mod , only : shr_strdata_type, shr_strdata_advance
-  use dshr_strdata_mod , only : shr_strdata_init_from_xml
+  use dshr_strdata_mod , only : shr_strdata_init_from_config
   use dshr_mod         , only : dshr_model_initphase, dshr_init
   use dshr_mod         , only : dshr_state_setscalar, dshr_set_runclock, dshr_log_clock_advance
   use dshr_mod         , only : dshr_restart_read, dshr_restart_write, dshr_mesh_init
@@ -64,7 +64,7 @@ module wav_comp_nuopc
   character(*) , parameter     :: nullstr = 'null'
 
   ! dwav_in namelist input
-  character(CL)                :: xmlfilename = nullstr               ! filename to obtain namelist info from
+  character(CL)                :: streamfilename = nullstr            ! filename to obtain stream info from
   character(CL)                :: nlfilename = nullstr                ! filename to obtain namelist info from
   character(CL)                :: dataMode = nullstr                  ! flags physics options wrt input data
   character(CL)                :: model_meshfile = nullstr            ! full pathname to model meshfile
@@ -273,8 +273,11 @@ subroutine InitializeRealize(gcomp, importState, exportState, clock, rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
     ! Initialize stream data type if not aqua planet
-    xmlfilename = 'dwav.streams'//trim(inst_suffix)//'.xml'
-    call shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, 'WAV', logunit, rc=rc)
+    streamfilename = 'dwav.streams'//trim(inst_suffix)
+#ifndef DISABLE_FoX
+    streamfilename = trim(streamfilename)//'.xml'
+#endif
+    call shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, 'WAV', logunit, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
     call ESMF_TraceRegionExit('dwav_strdata_init')
 

diff --git a/fox b/fox
diff --git a/streams/dshr_strdata_mod.F90 b/streams/dshr_strdata_mod.F90
@@ -34,7 +34,10 @@ module dshr_strdata_mod
   use dshr_stream_mod  , only : shr_stream_streamtype, shr_stream_getModelFieldList, shr_stream_getStreamFieldList
   use dshr_stream_mod  , only : shr_stream_taxis_cycle, shr_stream_taxis_extend, shr_stream_findBounds
   use dshr_stream_mod  , only : shr_stream_getCurrFile, shr_stream_setCurrFile, shr_stream_getMeshFilename
-  use dshr_stream_mod  , only : shr_stream_init_from_xml, shr_stream_init_from_inline
+  use dshr_stream_mod  , only : shr_stream_init_from_inline, shr_stream_init_from_esmfconfig
+#ifndef DISABLE_FoX
+  use dshr_stream_mod  , only : shr_stream_init_from_xml
+#endif
   use dshr_stream_mod  , only : shr_stream_getnextfilename, shr_stream_getprevfilename, shr_stream_getData
   use dshr_tinterp_mod , only : shr_tInterp_getCosz, shr_tInterp_getAvgCosz, shr_tInterp_getFactors
   use dshr_methods_mod , only : dshr_fldbun_getfldptr, dshr_fldbun_getfieldN, dshr_fldbun_fldchk, chkerr
@@ -53,7 +56,7 @@ module dshr_strdata_mod
   private
 
   public  :: shr_strdata_type
-  public  :: shr_strdata_init_from_xml
+  public  :: shr_strdata_init_from_config
   public  :: shr_strdata_init_from_inline
   public  :: shr_strdata_setOrbs
   public  :: shr_strdata_advance
@@ -173,11 +176,11 @@ type(ESMF_FieldBundle) function shr_strdata_get_stream_fieldbundle(sdat, ns, nam
   end function shr_strdata_get_stream_fieldbundle
 
   !===============================================================================
-  subroutine shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, compname, logunit, rc)
+  subroutine shr_strdata_init_from_config(sdat, streamfilename, model_mesh, clock, compname, logunit, rc)
 
     ! input/output variables
     type(shr_strdata_type)     , intent(inout) :: sdat
-    character(len=*)           , intent(in)    :: xmlfilename
+    character(len=*)           , intent(in)    :: streamfilename
     type(ESMF_Mesh)            , intent(in)    :: model_mesh
     type(ESMF_Clock)           , intent(in)    :: clock
     character(len=*)           , intent(in)    :: compname
@@ -187,7 +190,7 @@ subroutine shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, compn
     ! local variables
     type(ESMF_VM) :: vm
     integer       :: i, localPet
-    character(len=*), parameter  :: subname='(shr_strdata_init_from_xml)'
+    character(len=*), parameter  :: subname='(shr_strdata_init_from_config)'
     ! ----------------------------------------------
     rc = ESMF_SUCCESS
     call ESMF_LogWrite(subname//' called', ESMF_LOGMSG_INFO)
@@ -210,8 +213,13 @@ subroutine shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, compn
     ! Initialize sdat streams (read xml file for streams)
     sdat%masterproc = (localPet == master_task)
 
-    call shr_stream_init_from_xml(xmlfilename, sdat%stream, sdat%masterproc, sdat%logunit, &
+#ifdef DISABLE_FoX
+    call shr_stream_init_from_esmfconfig(streamfilename, sdat%stream, sdat%logunit, &
+         sdat%pio_subsystem, sdat%io_type, sdat%io_format, rc=rc)
+#else
+    call shr_stream_init_from_xml(streamfilename, sdat%stream, sdat%masterproc, sdat%logunit, &
          sdat%pio_subsystem, sdat%io_type, sdat%io_format, trim(compname), rc=rc)
+#endif
 
     allocate(sdat%pstrm(shr_strdata_get_stream_count(sdat)))
 
@@ -224,7 +232,7 @@ subroutine shr_strdata_init_from_xml(sdat, xmlfilename, model_mesh, clock, compn
     call shr_strdata_init(sdat, clock, rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
-  end subroutine shr_strdata_init_from_xml
+  end subroutine shr_strdata_init_from_config
 
   !===============================================================================
   subroutine shr_strdata_init_from_inline(sdat, my_task, logunit, compname, &