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RPKM, FPKM, and TPM-like normalization #8

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d-laub opened this issue Jul 27, 2023 · 1 comment
Open

RPKM, FPKM, and TPM-like normalization #8

d-laub opened this issue Jul 27, 2023 · 1 comment
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enhancement New feature or request

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d-laub commented Jul 27, 2023

Add a function for RPKM, FPKM, and TPKM-like normalization, given total counts. For example, to normalize read counts/depth from chromatin accessibility assays.
@d-laub d-laub added the enhancement New feature or request label Jul 27, 2023
@d-laub d-laub mentioned this issue Jul 27, 2023
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d-laub commented Jul 27, 2023

See normalization options offered by deepTools' bamCoverage.

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