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MDGuide
MDGuide PublicGuide for Molecular dynamics (MD) simulations with AMBER Software on ASU Sol cluster
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MDEvaluationGuide
MDEvaluationGuide PublicGuide for evaluating metrics for a Molecular dynamics (MD) simulation with AMBER Software on ASU Sol cluster
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ClusteringMDTrajectoryAndConvergenceCheck
ClusteringMDTrajectoryAndConvergenceCheck PublicGuide for Clustering an MD Trajectory And Convergence Check
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PyMOLGuide
PyMOLGuide PublicGuide for PyMOL, preparing pdb files for MD simulation, making mutations
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SMDGuide
SMDGuide PublicGuide for Steered Molecular dynamics (SMD) simulation on ASU Sol cluster
Python
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OpenMMScripts
OpenMMScripts PublicThis repository provides scripts for running NPT MD simulations using OpenMM, specifically designed for use on the PHX cluster.
Python
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