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1. MDGuide MDGuide Public

   Guide for Molecular dynamics (MD) simulations with AMBER Software on ASU Sol cluster

2. MDEvaluationGuide MDEvaluationGuide Public

   Guide for evaluating metrics for a Molecular dynamics (MD) simulation with AMBER Software on ASU Sol cluster

3. ClusteringMDTrajectoryAndConvergenceCheck ClusteringMDTrajectoryAndConvergenceCheck Public

   Guide for Clustering an MD Trajectory And Convergence Check

4. PyMOLGuide PyMOLGuide Public

   Guide for PyMOL, preparing pdb files for MD simulation, making mutations

5. SMDGuide SMDGuide Public

   Guide for Steered Molecular dynamics (SMD) simulation on ASU Sol cluster

   Python

6. OpenMMScripts OpenMMScripts Public

   This repository provides scripts for running NPT MD simulations using OpenMM, specifically designed for use on the PHX cluster.

   Python