[Production/AQM.v7] Update config files for ecflow, ex-scripts for op…

…erational rave (ufs-community#956)

* create a new branch to update operational rave and config files for ecflow

* update nexus_emission script for ecflow

* add a build script for nco implementation

* update bias_correction scripts for missing airnow data

* create an auto_link_fix sh

* rename auto_link_fix.sh

auto_build_exec.sh

@@ -0,0 +1,11 @@
+./manage_externals/checkout_externals
+
+module purge
+
+source versions/build.ver
+
+module use $(realpath modulefiles)
+
+module list
+
+./devbuild.sh -p=wcoss2 -a=ATMAQ  |& tee buildup.log

jobs/JREGIONAL_NEXUS_EMISSION

@@ -93,7 +93,7 @@ if [ "${RUN_TASK_NEXUS_GFS_SFC}" = "FALSE" ]; then
   yyyymmdd=${PDY}
   hh=${cyc}
   export GFS_SFC_CDATE=$( $DATE_UTIL --utc --date "${yyyymmdd} ${hh} UTC - ${TIME_OFFSET_HRS} hours" "+%Y%m%d%H" )
-
+  SLASH_ENSMEM_SUBDIR=${SLASH_ENSMEM_SUBDIR:-""}
   export GFS_SFC_STAGING_DIR="${COMIN}${SLASH_ENSMEM_SUBDIR}/tmp_NEXUS_GFS_SFC}"
 fi
 #

parm/config/aqm_nco_config.sh

@@ -6,22 +6,53 @@ set -eux
 #       vi aqm_nco_config.sh and modify General parameter
 #       sh aqm_nco_config.sh
 
-# File to modify
+# Load module
+set +x
+module load prod_envir prod_util
+module list
+set -x
+
+# General parameter must to be modified by NCEP/NCO/SPA
+#   Remove the remark and modify with running environment
+#### OPSROOT="/lfs/h1/ops/prod"
+#### COMROOT="..."
+#### WARMSTART_PDY="20231017"
+
+####################################################################################
+# No need to modify any line below
+####################################################################################
+
+# Target files to modify
 File_to_modify_source="var_defns.sh input.nml"
 
-# General parameter example
-#  ACCOUNT="AQM-DEV"
-#  HOMEaqm="\/lfs\/h1\/ops\/para\/packages\/aqm\.v7\.0"
-#  ENVIR_NCO="dev"
-#  COMaqm="\/lfs\/h1\/ops\/para\/com\/aqm\/v7\.0"
-#  WARMSTART_PDY="20231017"
+# Configure HOMEaqm using relative path assignment
+pwd=$(pwd -P)
+cd ../..
+HOMEaqm=$(pwd -P)
+
+# Source run.ver
+source $HOMEaqm/versions/run.ver
+
+# Assign COMaqm using production utility
+COMROOT=${COMROOT:-${OPSROOT}/com}
+COMaqm=$(compath.py -o aqm/${aqm_ver})
+COMINgefs=$(compath.py gefs/${gefs_ver})
+
+# Replace special characters with backslash
+OPSROOT=$(echo ${OPSROOT} | sed 's/[^[:alnum:]_-]/\\&/g')
+HOMEaqm=$(echo ${HOMEaqm} | sed 's/[^[:alnum:]_-]/\\&/g')
+COMROOT=$(echo ${COMROOT} | sed 's/[^[:alnum:]_-]/\\&/g')
+COMaqm=$(echo ${COMaqm} | sed 's/[^[:alnum:]_-]/\\&/g')
+COMINgefs=$(echo ${COMINgefs} | sed 's/[^[:alnum:]_-]/\\&/g')
 
+# Dynamically generate target files
+cd ${pwd}
 for file_in in ${File_to_modify_source}; do
   cp ${file_in}.nco.static ${file_in}.nco.static-BACKUP
-  sed -i -e "s/@ACCOUNT@/${ACCOUNT}/g" ${file_in}.nco.static
   sed -i -e "s/@HOMEaqm@/${HOMEaqm}/g" ${file_in}.nco.static
-  sed -i -e "s/@ENVIR_NCO@/${ENVIR_NCO}/g" ${file_in}.nco.static
   sed -i -e "s/@COMaqm@/${COMaqm}/g" ${file_in}.nco.static
   sed -i -e "s/@WARMSTART_PDY@/${WARMSTART_PDY}/g" ${file_in}.nco.static
+  sed -i -e "s/@OPSROOT@/${OPSROOT}/g" ${file_in}.nco.static
+  sed -i -e "s/@COMINgefs@/${COMINgefs}/g" ${file_in}.nco.static
   mv ${file_in}.nco.static ${file_in}
 done