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ontologies.Makefile
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ontologies.Makefile
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download/upheno.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/upheno.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/upheno.owl
db/upheno.owl: download/upheno.owl
robot merge -i $< -o $@
download/chiro.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/chiro.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chiro.owl
db/chiro.owl: download/chiro.owl
robot relax -i $< merge -o $@
download/ncit.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/ncit.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ncit.owl
db/ncit.owl: download/ncit.owl
robot relax -i $< merge -o $@
download/fma.owl: STAMP
curl -L -s http://sig.biostr.washington.edu/share/downloads/fma/release/latest/fma.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/fma.owl
db/fma.owl: download/fma.owl
cp $< $@
download/maxo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/maxo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/maxo.owl
db/maxo.owl: download/maxo.owl
robot relax -i $< merge reason -r structural -o $@
download/foodon.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/foodon.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/foodon.owl
db/foodon.owl: download/foodon.owl
robot merge -i $< relax reduce -c true -o $@
download/chebiplus.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/chebi.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chebiplus.owl
db/chebiplus.owl: download/chebiplus.owl
robot merge -i $< -I http://purl.obolibrary.org/obo/chiro.owl relax -o $@
download/msio.owl: STAMP
curl -L -s https://github.com/raw/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/msio.owl
db/msio.owl: download/msio.owl
cp $< $@
download/modl.owl: STAMP
curl -L -s https://github.com/raw/Data-Semantics-Laboratory/modular-ontology-design-library/master/MODL.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/modl.owl
db/modl.owl: download/modl.owl
cp $< $@
download/phenio.owl: STAMP
curl -L -s https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/phenio.owl
db/phenio.owl: download/phenio.owl
cp $< $@
download/phenio_test.owl: STAMP
curl -L -s https://github.com/monarch-initiative/phenio/releases/latest/download/phenio-test.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/phenio_test.owl
db/phenio_test.owl: download/phenio_test.owl
cp $< $@
download/comploinc.owl: STAMP
curl -L -s https://github.com/loinc/comp-loinc/releases/download/v2022-11-05/merged_reasoned_loinc.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/comploinc.owl
db/comploinc.owl: download/comploinc.owl
robot relax -i $< merge -o $@
download/bero.owl: STAMP
curl -L -s https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/bero.owl
db/bero.owl: download/bero.owl
cp $< $@
download/aio.owl: STAMP
curl -L -s https://github.com/raw/berkeleybop/artificial-intelligence-ontology/main/aio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/aio.owl
db/aio.owl: download/aio.owl
cp $< $@
download/reacto.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/reacto.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/reacto.owl
db/reacto.owl: download/reacto.owl
cp $< $@
download/bcio.owl: STAMP
curl -L -s http://humanbehaviourchange.org/ontology/bcio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/bcio.owl
db/bcio.owl: download/bcio.owl
cp $< $@
download/icd10who.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/icd10who.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/icd10who.owl
db/icd10who.owl: download/icd10who.owl
cp $< $@
download/ordo.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/ordo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ordo.owl
db/ordo.owl: download/ordo.owl
cp $< $@
download/gard.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/gard.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/gard.owl
db/gard.owl: download/gard.owl
cp $< $@
download/mondo-ingest.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/mondo-ingest.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/mondo-ingest.owl
db/mondo-ingest.owl: download/mondo-ingest.owl
cp $< $@
download/oeo.owl: STAMP
curl -L -s https://openenergyplatform.org/ontology/oeo/releases/oeo-full.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/oeo.owl
db/oeo.owl: download/oeo.owl
cp $< $@
download/taxslim.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/taxslim.owl
db/taxslim.owl: download/taxslim.owl
robot convert -i $< -o $@
download/goldterms.owl: STAMP
curl -L -s https://github.com/raw/cmungall/gold-ontology/main/gold.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/goldterms.owl
db/goldterms.owl: download/goldterms.owl
robot relax -i $< reason -o $@
download/sdgio.owl: STAMP
curl -L -s https://github.com/raw/SDG-InterfaceOntology/sdgio/master/sdgio.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sdgio.owl
db/sdgio.owl: download/sdgio.owl
cp $< $@
download/kin.owl: STAMP
curl -L -s http://purl.org/ga4gh/kin.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/kin.owl
db/kin.owl: download/kin.owl
robot reason -i $< -o $@
download/biovoices.owl: STAMP
curl -L -s https://zenodo.org/record/5589773/files/ontology.owl?download=1 > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biovoices.owl
db/biovoices.owl: download/biovoices.owl
robot relax -i $< merge -o $@
download/omop.owl: STAMP
curl -L -s None > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/omop.owl
db/omop.owl: download/omop.owl
cp $< $@
download/comet.owl: STAMP
curl -L -s https://github.com/raw/linkml/linkml-common/main/project/owl/linkml_common.owl.ttl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/comet.owl
db/comet.owl: download/comet.owl
robot relax -i $< merge -o $@
download/cco.owl: STAMP
curl -L -s http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cco.owl
db/cco.owl: download/cco.owl
robot merge -i $< relax -o $@
download/occo.owl: STAMP
curl -L -s https://github.com/raw/Occupation-Ontology/OccO/main/src/ontology/occo-merged.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/occo.owl
db/occo.owl: download/occo.owl
cp $< $@
download/iof.owl: STAMP
curl -L -s https://spec.industrialontologies.org/ontology/AboutIOFProd/ > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/iof.owl
db/iof.owl: download/iof.owl
robot relax -i $< merge -o $@
download/upa.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/upa.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/upa.owl
db/upa.owl: download/upa.owl
cp $< $@
download/go.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-plus.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/go.owl
db/go.owl: download/go.owl
cp $< $@
download/go-lego.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-lego.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/go-lego.owl
db/go-lego.owl: download/go-lego.owl
cp $< $@
download/go-amigo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-amigo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/go-amigo.owl
db/go-amigo.owl: download/go-amigo.owl
cp $< $@
download/neo.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/go/noctua/neo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/neo.owl
db/neo.owl: download/neo.owl
cp $< $@
download/bao.owl: STAMP
curl -L -s http://www.bioassayontology.org/bao/bao_complete.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/bao.owl
db/bao.owl: download/bao.owl
robot merge -i $< -o $@
download/orcid.owl: STAMP
curl -L -s https://github.com/raw/cthoyt/wikidata-orcid-ontology/main/orcid.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/orcid.owl
db/orcid.owl: download/orcid.owl
cp $< $@
download/cpont.owl: STAMP
curl -L -s https://w3id.org/cpont/cpont.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cpont.owl
db/cpont.owl: download/cpont.owl
cp $< $@
download/biolink.owl: STAMP
curl -L -s https://w3id.org/biolink/biolink-model.owl.ttl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biolink.owl
db/biolink.owl: download/biolink.owl
robot merge -i $< -o $@
download/biopax.owl: STAMP
curl -L -s http://www.biopax.org/release/biopax-level3.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/biopax.owl
db/biopax.owl: download/biopax.owl
cp $< $@
download/enanomapper.owl: STAMP
curl -L -s http://enanomapper.github.io/ontologies/enanomapper.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/enanomapper.owl
db/enanomapper.owl: download/enanomapper.owl
robot merge -i $< -o $@
download/mlo.owl: STAMP
curl -L -s https://github.com/raw/berkeleybop/artificial-intelligence-ontology/v2023-09-11/external/ml-ontology-202010021305.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/mlo.owl
db/mlo.owl: download/mlo.owl
robot merge -i $< -o $@
download/ito.owl: STAMP
curl -L -s https://github.com/OpenBioLink/ITO/raw/master/ITO.owl.zip > $@.zip.tmp && unzip -p $@.zip.tmp ITO.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ito.owl
db/ito.owl: download/ito.owl
cp $< $@
download/cso.owl: STAMP
curl -L -s https://cso.kmi.open.ac.uk/download/version-3.3/CSO.3.3.owl.zip > $@.zip.tmp && unzip -p $@.zip.tmp CSO.3.3.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cso.owl
db/cso.owl: download/cso.owl
cp $< $@
download/obiws.owl: STAMP
curl -L -s https://data.bioontology.org/ontologies/OBIWS/submissions/2/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/obiws.owl
db/obiws.owl: download/obiws.owl
cp $< $@
download/reactome-hs.owl: STAMP
curl -L -s https://reactome.org/download/current/biopax.zip > $@.zip.tmp && unzip -p $@.zip.tmp Homo_sapiens.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/reactome-hs.owl
db/reactome-hs.owl: download/reactome-hs.owl
cp $< $@
download/reactome-mm.owl: STAMP
curl -L -s https://reactome.org/download/current/biopax.zip > $@.zip.tmp && unzip -p $@.zip.tmp Mus_musculus.owl > $@.tmp && rm $@.zip.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/reactome-mm.owl
db/reactome-mm.owl: download/reactome-mm.owl
cp $< $@
download/efo.owl: STAMP
curl -L -s http://www.ebi.ac.uk/efo/efo.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/efo.owl
db/efo.owl: download/efo.owl
robot merge -i $< -o $@
download/hcao.owl: STAMP
curl -L -s https://github.com/raw/HumanCellAtlas/ontology/master/hcao.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hcao.owl
db/hcao.owl: download/hcao.owl
cp $< $@
download/hpinternational.owl: STAMP
curl -L -s http://purl.obolibrary.org/obo/hp/hp-international.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hpinternational.owl
db/hpinternational.owl: download/hpinternational.owl
cp $< $@
download/edam.owl: STAMP
curl -L -s http://edamontology.org/EDAM.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/edam.owl
db/edam.owl: download/edam.owl
cp $< $@
download/chr.owl: STAMP
curl -L -s https://github.com/raw/monarch-initiative/monochrom/master/chr.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/chr.owl
db/chr.owl: download/chr.owl
cp $< $@
download/sweetAll.owl: STAMP
curl -L -s http://sweetontology.net/sweetAll > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sweetAll.owl
db/sweetAll.owl: download/sweetAll.owl
robot merge -i $< -o $@
download/lov.owl: STAMP
curl -L -s https://lov.linkeddata.es/lov.n3.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/lov.owl
db/lov.owl: download/lov.owl
robot merge -i $< -o $@
download/schema-dot-org.owl: STAMP
curl -L -s https://schema.org/version/latest/schemaorg-current-https.rdf > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/schema-dot-org.owl
db/schema-dot-org.owl: download/schema-dot-org.owl
cp $< $@
download/prov.owl: STAMP
curl -L -s http://www.w3.org/ns/prov.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/prov.owl
db/prov.owl: download/prov.owl
cp $< $@
download/dtype.owl: STAMP
curl -L -s http://www.linkedmodel.org/schema/dtype > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/dtype.owl
db/dtype.owl: download/dtype.owl
cp $< $@
download/vaem.owl: STAMP
curl -L -s http://www.linkedmodel.org/schema/vaem > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/vaem.owl
db/vaem.owl: download/vaem.owl
cp $< $@
download/qudtunit.owl: STAMP
curl -L -s http://qudt.org/vocab/unit > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/qudtunit.owl
db/qudtunit.owl: download/qudtunit.owl
robot merge -i $< -o $@
download/quantitykind.owl: STAMP
curl -L -s http://qudt.org/vocab/quantitykind > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/quantitykind.owl
db/quantitykind.owl: download/quantitykind.owl
robot merge -i $< -o $@
download/cellosaurus.owl: STAMP
curl -L -s https://github.com/raw/calipho-sib/cellosaurus/master/cellosaurus.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cellosaurus.owl
db/cellosaurus.owl: download/cellosaurus.owl
robot merge -i $< -o $@
download/cosmo.owl: STAMP
curl -L -s https://micra.com/COSMO/COSMO.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/cosmo.owl
db/cosmo.owl: download/cosmo.owl
robot merge -i $< -o $@
download/fhkb.owl: STAMP
curl -L -s None > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/fhkb.owl
db/fhkb.owl: download/fhkb.owl
cp $< $@
download/dbpendiaont.owl: STAMP
curl -L -s https://databus.dbpedia.org/ontologies/dbpedia.org/ontology--DEV/2023.01.03-072003/ontology--DEV_type=parsed.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/dbpendiaont.owl
db/dbpendiaont.owl: download/dbpendiaont.owl
cp $< $@
download/uberoncm.owl: STAMP
curl -L -s https://github.com/obophenotype/uberon/releases/latest/download/composite-metazoan.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/uberoncm.owl
db/uberoncm.owl: download/uberoncm.owl
cp $< $@
download/icd10cm.owl: STAMP
curl -L -s https://github.com/monarch-initiative/mondo-ingest/releases/latest/download/icd10cm.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/icd10cm.owl
db/icd10cm.owl: download/icd10cm.owl
cp $< $@
download/co_324.owl: STAMP
curl -L -s https://cropontology.org/ontology/CO_324/rdf > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/co_324.owl
db/co_324.owl: download/co_324.owl
cp $< $@
download/ppeo.owl: STAMP
curl -L -s http://purl.org/ppeo/PPEO.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ppeo.owl
db/ppeo.owl: download/ppeo.owl
cp $< $@
download/interpro.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/interpro/interpro.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/interpro.owl
db/interpro.owl: download/interpro.owl
perl -npe 's@ go:@ GO:@g;s@ ro:@ RO:@g;s@ interpro:@ InterPro:@g' $< > $@.tmp && robot convert -i $@.tmp -o $@
download/hgnc.genegroup.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/hgnc.genegroup/hgnc.genegroup.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hgnc.genegroup.owl
db/hgnc.genegroup.owl: download/hgnc.genegroup.owl
cp $< $@
download/hgnc.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/hgnc/2022-06-01/hgnc.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/hgnc.owl
db/hgnc.owl: download/hgnc.owl
cp $< $@
download/sgd.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/sgd/sgd.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/sgd.owl
db/sgd.owl: download/sgd.owl
robot merge -i $< -o $@
download/dictybase.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/dictybase/dictybase.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/dictybase.owl
db/dictybase.owl: download/dictybase.owl
cp $< $@
download/eccode.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/eccode/eccode.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/eccode.owl
db/eccode.owl: download/eccode.owl
cp $< $@
download/uniprot.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/uniprot/2022_02/uniprot.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/uniprot.owl
db/uniprot.owl: download/uniprot.owl
cp $< $@
download/rhea.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/rhea/rhea.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/rhea.owl
db/rhea.owl: download/rhea.owl
cp $< $@
download/swisslipid.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/swisslipid/2023-02-03/swisslipid.obo.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/swisslipid.owl
db/swisslipid.owl: download/swisslipid.owl
robot merge -i $< -o $@
download/drugbank.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/drugbank/5.1.9/drugbank.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/drugbank.owl
db/drugbank.owl: download/drugbank.owl
cp $< $@
download/drugcentral.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/drugcentral.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/drugcentral.owl
db/drugcentral.owl: download/drugcentral.owl
cp $< $@
download/complexportal.owl: STAMP
curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/complexportal/2022-02-03/complexportal.owl.gz | gzip -dc > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/complexportal.owl
db/complexportal.owl: download/complexportal.owl
cp $< $@
download/wikipathways.owl: STAMP
curl -L -s https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/wikipathways.owl
db/wikipathways.owl: download/wikipathways.owl
cp $< $@
download/drugmechdb.owl: STAMP
curl -L -s None > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/drugmechdb.owl
db/drugmechdb.owl: download/drugmechdb.owl
cp $< $@
download/rxnorm.owl: STAMP
curl -L -s None > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/rxnorm.owl
db/rxnorm.owl: download/rxnorm.owl
cp $< $@
download/vccf.owl: STAMP
curl -L -s https://github.com/raw/obophenotype/vccf-ontology/main/vccf.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/vccf.owl
db/vccf.owl: download/vccf.owl
cp $< $@
download/ontobiotope.owl: STAMP
curl -L -s 'https://data.agroportal.lirmm.fr/ontologies/ONTOBIOTOPE/download?apikey=1de0a270-29c5-4dda-b043-7c3580628cd5&download_format=rdf' > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ontobiotope.owl
db/ontobiotope.owl: download/ontobiotope.owl
cp $< $@
download/nando.owl: STAMP
curl -L -s 'https://data.bioontology.org/ontologies/NANDO/submissions/15/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb' > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/nando.owl
db/nando.owl: download/nando.owl
cp $< $@
download/ecso.owl: STAMP
curl -L -s 'https://data.bioontology.org/ontologies/ECSO/submissions/64/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb' > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ecso.owl
db/ecso.owl: download/ecso.owl
cp $< $@
download/enigma_context.owl: STAMP
curl -L -s https://github.com/raw/jmchandonia/CORAL/main/example/enigma/ontologies/context_measurement_ontology.obo > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/enigma_context.owl
db/enigma_context.owl: download/enigma_context.owl
robot merge -i $< -o $@
download/ontie.owl: STAMP
curl -L -s https://ontology.iedb.org/file/ontie.owl > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ontie.owl
db/ontie.owl: download/ontie.owl
cp $< $@
download/ecosim.owl: STAMP
curl -L -s https://data.bioontology.org/ontologies/ECOSIM/submissions/1/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb > $@.tmp
sha256sum -b $@.tmp > $@.sha256
mv $@.tmp $@
.PRECIOUS: download/ecosim.owl
db/ecosim.owl: download/ecosim.owl
cp $< $@