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File "/Users/cjm/repos/ontology-access-kit/src/oaklib/implementations/semsimian/semsimian_implementation.py", line 237, in termset_pairwise_similarity
semsimian = self._get_semsimian_object(
File "/Users/cjm/repos/ontology-access-kit/src/oaklib/implementations/semsimian/semsimian_implementation.py", line 88, in _get_semsimian_object
predicates = tuple(sorted(predicates))
TypeError: 'NoneType' object is not iterable
Minimally it should check for this condition and throw a NotImplemented error with a message explaining that predicates must be selected
or better: semsimian should simply accept empty predicates, meaning use all predicates
The text was updated successfully, but these errors were encountered:
runoak --stacktrace -i semsimian:sqlite:obo:phenio -v termset-similarity MP:0010771 MP:0002169 MP:0005391 MP:0005389 MP:0005367 @ HP:0004325 HP:0000093 MP:0006144 HP:0001254 HP:0001217 HP:0001222 HP:0001248 HP:0001263 HP:0001279
gives
Minimally it should check for this condition and throw a NotImplemented error with a message explaining that predicates must be selected
or better: semsimian should simply accept empty predicates, meaning use all predicates
The text was updated successfully, but these errors were encountered: