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FMA parentheses draft PR #12

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dcaadf7
set %label in register_netcdf_field and register_netcdf_axis (#262)
alperaltuntas Nov 6, 2023
ab3b0aa
Automated Runtime Land Block Elimination (#263)
alperaltuntas Dec 20, 2023
8f73fb2
fix intraday CESM restart file names (#267)
alperaltuntas Jan 14, 2024
5578478
merge latest main and resolve conflicts in mom_cap.
alperaltuntas Feb 9, 2024
71665fb
Fix biharmonic leith (#268)
iangrooms Feb 10, 2024
e92c971
Merge pull request #270 from NCAR/merge_main2
gustavo-marques Feb 11, 2024
526cc7f
Merge branch 'main' into merge_main_29feb24
gustavo-marques Feb 29, 2024
39368f0
Remove extra & from u/v_smooth
gustavo-marques Feb 29, 2024
fd5696b
Pinning package requirements for readthedocs
adcroft Feb 29, 2024
f9da673
Create BUILD and WORK directory macros
marshallward Jan 16, 2024
13fbeb7
Merge pull request #271 from gustavo-marques/merge_main_29feb24
alperaltuntas Mar 6, 2024
2ae6385
Refactor set_viscous_BBL channel drag calculations
Hallberg-NOAA Dec 22, 2023
da02ffc
+Add find_L_open_concave_iterative
Hallberg-NOAA Dec 30, 2023
e1ea758
Add the debugging routine test_L_open_concave
Hallberg-NOAA Jan 15, 2024
714d2da
Minor refactoring in set_viscous_BBL
Hallberg-NOAA Mar 5, 2024
6153d97
Compute dz in the halo for OBC segments
kshedstrom Mar 9, 2024
0ff03ae
+Fix myStats global indexing segmentation faults
Hallberg-NOAA Feb 6, 2024
0bd4c16
(*)Fix apply_topography_edits_from_file indexing
Hallberg-NOAA Feb 8, 2024
9e78615
Earlier initialization thickness halo updates
Hallberg-NOAA Feb 4, 2024
1ae2a3a
+(*)Refactor MOM_diag_remap for global indices
Hallberg-NOAA Feb 5, 2024
d311b1d
+(*)Use z-space remapping for some diagnostics
Hallberg-NOAA Feb 5, 2024
611f575
+(*)Fix downsample_mask indexing bugs
Hallberg-NOAA Feb 6, 2024
2bc04bd
(*)Eliminate IIm1 and JJm1 in Update_Stokes_Drift
Hallberg-NOAA Feb 29, 2024
744dbcc
Document remapping function variable units
Hallberg-NOAA Feb 14, 2024
a23c7d8
fix gtracer restart repro issue with OBC
yichengt900 Mar 12, 2024
4fd0162
Rotation bugfixes
marshallward Mar 14, 2024
de59adf
Make the US argument to MOM_domains_init optional
Hallberg-NOAA Mar 20, 2024
e75d1da
Merge pull request #272 from Hallberg-NOAA/fix_dev_ncar_20240319
alperaltuntas Mar 20, 2024
32f6316
+Rotationally symmetric neutral diffusion option
Hallberg-NOAA Feb 29, 2024
812510b
Add an option in hor_visc to use cont thickness
herrwang0 Mar 4, 2024
37ff301
fix opemmp parallel
herrwang0 Mar 4, 2024
2b59089
Set up auxiliary domain for unrotated grid
Hallberg-NOAA Mar 5, 2024
5e34f48
Set flags properly for rotated tripolar grids
Hallberg-NOAA Mar 6, 2024
87913b5
Merge pull request #1621 from NCAR/dev/ncar-candidate-240319
alperaltuntas Apr 1, 2024
f9372f3
+Add get_netcdf_filename for a get_field_nc error
Hallberg-NOAA Mar 11, 2024
a3fd1f3
+Rotationally symmetric epipycnal diffusion option
Hallberg-NOAA Mar 18, 2024
a71fbce
Merge branch 'main' into main_to_dev_20240405
marshallward Apr 5, 2024
2d121dc
(*)Pass dz to user initialize_ALE_sponge calls
Hallberg-NOAA Jan 24, 2024
c86358b
(*)Avoiding using RHO_0 in non-Boussinesq debugging
Hallberg-NOAA Jan 20, 2024
43b2a43
Add units to the descriptions of 141 variables
Hallberg-NOAA Apr 1, 2024
b98acd8
Add units to the descriptions of 115 variables
Hallberg-NOAA Mar 19, 2024
5b9ae52
Disable codecov upload requirement
marshallward Apr 12, 2024
6f1c79e
CPP expression parser for makedep
marshallward Apr 2, 2024
3a3baf1
(*)Fix Stokes drift spectrum rescaling
Hallberg-NOAA Apr 2, 2024
6c44c5f
Fix for using tidal amplitude in determining the BBL thickness
adcroft Apr 4, 2024
f7a4491
Perf: Better error report for failed parsing
marshallward Apr 5, 2024
1c4d0dc
Better document variable units in 3 user modules
Hallberg-NOAA Apr 5, 2024
0efe83d
Proto-type cricital latitude modification of Henyey
adcroft Jul 14, 2023
01b2ea9
Document units of 34 real variables in vertFPmix
Hallberg-NOAA Oct 26, 2023
4058462
Refactoring density integrals for efficiency
Hallberg-NOAA Mar 31, 2024
1939836
(*)Parenthesize squares of wind stresses for FMAs
Hallberg-NOAA Mar 1, 2024
20035af
(*)Parenthesize continuity_PPM curv_3 expressions
Hallberg-NOAA Feb 29, 2024
7ca4f55
(*)Add parentheses for oblique OBCs with FMAs
Hallberg-NOAA Mar 1, 2024
c8ff244
(*)Add parentheses for density_integrals with FMAs
Hallberg-NOAA Mar 1, 2024
70365b9
(*)Add parentheses to 4 EOS int_density routines
Hallberg-NOAA Mar 1, 2024
074c7ad
(*)Simplify density integral parentheses
Hallberg-NOAA Mar 4, 2024
7d19b18
(*)Parenthesize PressureForce_Montgomery for FMAs
Hallberg-NOAA Mar 1, 2024
11b3cb7
(*)Parenthesize calc_isoneutral_slopes for FMAs
Hallberg-NOAA Mar 1, 2024
ab06a3d
(*)Parenthesize MOM_calc_varT for FMAs
Hallberg-NOAA Mar 1, 2024
1dc16b3
(*)Parenthesize tracer_hordiff for FMAs
Hallberg-NOAA Mar 1, 2024
1602687
(*)Parenthesize iceberg_forces for FMAs
Hallberg-NOAA Mar 1, 2024
7a2a29d
(*)Parenthesize CoriolisStokes and LA_Stk for FMAs
Hallberg-NOAA Mar 1, 2024
bab75d2
+(*)Add and use G%Coriolis2Bu
Hallberg-NOAA Mar 1, 2024
93f34d5
(*)Parenthesize thickness_diffuse for FMAs
Hallberg-NOAA Mar 1, 2024
2a9d63f
(*)Parenthesize Zanna_Bolton for FMAs
Hallberg-NOAA Mar 1, 2024
135086d
(*)Parenthesize MOM_internal_tides for FMAs
Hallberg-NOAA Mar 1, 2024
2715075
(*)Parenthesize find_uv_at_h for FMAs
Hallberg-NOAA Mar 1, 2024
c591535
(*)Parenthesize set_viscous_ML for FMAs
Hallberg-NOAA Mar 1, 2024
6528229
(*)Rearrange calc_kappa_shear_vertex for FMAs
Hallberg-NOAA Mar 1, 2024
da6dd9e
(*)Parenthesize MOM_set_diffusivity for FMAs
Hallberg-NOAA Mar 1, 2024
cc44ed6
(*)Parenthesize CorAdCalc for FMAs
Hallberg-NOAA Mar 1, 2024
8dcf9ad
(*)Parenthesize MOM_barotropic for FMAs
Hallberg-NOAA Mar 1, 2024
51fbb0d
(*)Parenthesize MOM_lateral_mixing_coeffs for FMAs
Hallberg-NOAA Mar 2, 2024
7d88bf7
(*)Parenthesize MOM_hor_visc for FMAs
Hallberg-NOAA Apr 18, 2024
fbffb47
(*)Parenthesize initialization squares for FMAs
Hallberg-NOAA Mar 3, 2024
35c9a7f
(*)Parenthesize parameterization squares for FMAs
Hallberg-NOAA Mar 3, 2024
3218192
(*)Parenthesize diagnostics for FMAs
Hallberg-NOAA Apr 30, 2024
20003f7
(*)Parenthesize tracer_advect PPM edge values
Hallberg-NOAA May 5, 2024
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2 changes: 1 addition & 1 deletion .github/actions/testing-setup/action.yml
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ runs:
run: |
echo "::group::Compile FMS library"
cd .testing
REPORT_ERROR_LOGS=true make deps/lib/libFMS.a -s -j
REPORT_ERROR_LOGS=true make build/deps/lib/libFMS.a -s -j
echo "::endgroup::"
- name: Compile MOM6 in symmetric memory mode
Expand Down
18 changes: 2 additions & 16 deletions .github/workflows/coverage.yml
Original file line number Diff line number Diff line change
Expand Up @@ -31,14 +31,7 @@ jobs:
- name: Run (single processor) unit tests
run: make run.unit

- name: Report unit test coverage to CI (PR)
if: github.event_name == 'pull_request'
run: make report.cov.unit REQUIRE_COVERAGE_UPLOAD=true
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

- name: Report unit test coverage to CI (Push)
if: github.event_name != 'pull_request'
- name: Report unit test coverage to CI
run: make report.cov.unit
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
Expand All @@ -49,14 +42,7 @@ jobs:
- name: Run coverage tests
run: make -j -k run.cov

- name: Report coverage to CI (PR)
if: github.event_name == 'pull_request'
run: make report.cov REQUIRE_COVERAGE_UPLOAD=true
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

- name: Report coverage to CI (Push)
if: github.event_name != 'pull_request'
- name: Report coverage to CI
run: make report.cov
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
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