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📊 🧬 Real-time genetic data streaming

biostream-logo

Data processing, streaming and analytics (ETL) software for genetic data, including nucleotide genome sequences

Source:

NCBI Datasets Data Packages can include sequence, annotation and other data files, and metadata in one or more data report files. Data report files are in JSON Lines format.

https://www.ncbi.nlm.nih.gov/datasets

Data used:

Organism Scientific Name: Dalotia coriaria https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=866043

Preview

  • Nucleotide Distribution | Near Real Time
genomic.mp4

Tools, Technologies and Modules

  • Rust | Cli
  • Websockets
  • Tornado
  • RabbitMQ
  • Streamlit
  • Plotly

Architeture:

arch-biostream