-
Notifications
You must be signed in to change notification settings - Fork 7
/
NAMESPACE
101 lines (100 loc) · 2.8 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
# Generated by roxygen2: do not edit by hand
export(annotate_iGraph)
export(annotate_modules)
export(annotation_enrichment)
export(as.rank.table)
export(calculate_correlation_matrix)
export(get_between_GO_sim)
export(get_col_gradient)
export(get_iGraph)
export(get_jaccard)
export(get_jaccard_sim)
export(get_master_gene_table)
export(get_mod_gene_tables)
export(get_modules)
export(get_ranked_consensus_matrix)
export(get_ranked_gene_list)
export(get_sub_graph)
export(get_visNetwork)
export(go_summarization)
export(highlight_vertices)
export(launch_INfORM)
export(parse_edge_rank_matrix)
export(plot_sim_heatmap)
export(plot_treemap)
export(progressive_enrichment)
export(set_edge_color)
export(set_vertex_color)
import(DT)
import(R.utils)
import(org.Hs.eg.db)
import(org.Mm.eg.db)
import(shinydashboard)
importFrom(AnnotationDbi,get)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,select)
importFrom(GOSemSim,godata)
importFrom(GOSemSim,mgoSim)
importFrom(GSEABase,getOBOCollection)
importFrom(GSEABase,ids)
importFrom(TopKLists,Borda)
importFrom(doParallel,registerDoParallel)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(foreach,getDoParName)
importFrom(foreach,getDoParWorkers)
importFrom(grDevices,colorRampPalette)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,betweenness)
importFrom(igraph,closeness)
importFrom(igraph,cluster_fast_greedy)
importFrom(igraph,cluster_louvain)
importFrom(igraph,cluster_spinglass)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,communities)
importFrom(igraph,degree)
importFrom(igraph,edge_attr)
importFrom(igraph,eigen_centrality)
importFrom(igraph,get.edgelist)
importFrom(igraph,get.edges)
importFrom(igraph,get.vertex.attribute)
importFrom(igraph,graph.adjacency)
importFrom(igraph,induced.subgraph)
importFrom(igraph,list.edge.attributes)
importFrom(igraph,list.vertex.attributes)
importFrom(igraph,neighborhood)
importFrom(igraph,transitivity)
importFrom(igraph,vcount)
importFrom(igraph,vertex_attr)
importFrom(minet,minet)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(plyr,.)
importFrom(plyr,aaply)
importFrom(plyr,ddply)
importFrom(plyr,laply)
importFrom(plyr,summarise)
importFrom(shiny,runApp)
importFrom(shinyjs,disable)
importFrom(shinyjs,enable)
importFrom(shinyjs,info)
importFrom(shinyjs,onclick)
importFrom(shinyjs,toggle)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,fisher.test)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(treemap,treemap)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(visNetwork,visEvents)
importFrom(visNetwork,visIgraph)
importFrom(visNetwork,visIgraphLayout)
importFrom(visNetwork,visOptions)