Bring in new directory structure from development

doc/ChangeLog

@@ -1,6 +1,93 @@
 ===============================================================
 
-Tag name:
+Tag name: atmos_phys0_05_001
+Originator(s): nusbaume
+Date: October 10, 2024
+One-line Summary: Move suite and scheme files to new directories
+Github PR URL: https://github.com/ESCOMP/atmospheric_physics/pull/126
+
+This PR fixes the following NCAR/atmospheric_physics Github issues:
+
+Fixes #124 -> Re-organize directory structure
+
+Code reviewed by: peverwhee, jimmielin
+
+List all existing files that have been added (A), modified (M), or deleted (D),
+and describe the changes:
+
+- Move top-level suite definition files to "suites" directory:
+R100    suite_cam4.xml              suites/suite_cam4.xml
+R100    suite_cam6.xml              suites/suite_cam6.xml
+R100    suite_cam6_silhs.xml        suites/suite_cam6_silhs.xml
+R100    suite_cam7.xml              suites/suite_cam7.xml
+R100    suite_held_suarez_1994.xml  suites/suite_held_suarez_1994.xml
+R100    suite_kessler.xml           suites/suite_kessler.xml
+R100    suite_musica.xml            suites/suite_musica.xml
+R100    suite_tj2016.xml            suites/suite_tj2016.xml
+
+- Rename 'test_sdfs' to 'test_suites':
+R100    test/test_sdfs/suite_dry_adiabatic_adjust.xml   test/test_suites/suite_dry_adiabatic_adjust.xml
+R100    test/test_sdfs/suite_tj2016_precip.xml          test/test_suites/suite_tj2016_precip.xml
+R100    test/test_sdfs/suite_tj2016_sfc_pbl_hs.xml      test/test_suites/suite_tj2016_sfc_pbl_hs.xml
+R100    test/test_sdfs/suite_tropopause_find.xml        test/test_suites/suite_tropopause_find.xml
+
+- Move top-level scheme directories to new "schemes" subdirectory:
+R100    cam_diagnostics/tropopause_diagnostics.F90         schemes/cam_diagnostics/tropopause_diagnostics.F90
+R100    cam_diagnostics/tropopause_diagnostics.meta        schemes/cam_diagnostics/tropopause_diagnostics.meta
+R100    dry_adiabatic_adjust/dadadj.F90                    schemes/dry_adiabatic_adjust/dadadj.F90
+R100    dry_adiabatic_adjust/dadadj.meta                   schemes/dry_adiabatic_adjust/dadadj.meta
+R100    dry_adiabatic_adjust/dadadj_apply_qv_tendency.F90  schemes/dry_adiabatic_adjust/dadadj_apply_qv_tendency.F90
+R100    dry_adiabatic_adjust/dadadj_apply_qv_tendency.meta schemes/dry_adiabatic_adjust/dadadj_apply_qv_tendency.meta
+R100    dry_adiabatic_adjust/dadadj_namelist.xml           schemes/dry_adiabatic_adjust/dadadj_namelist.xml
+R100    held_suarez/held_suarez_1994.F90                   schemes/held_suarez/held_suarez_1994.F90
+R100    held_suarez/held_suarez_1994.meta                  schemes/held_suarez/held_suarez_1994.meta
+R100    kessler/kessler.F90                                schemes/kessler/kessler.F90
+R100    kessler/kessler.meta                               schemes/kessler/kessler.meta
+R100    kessler/kessler_update.F90                         schemes/kessler/kessler_update.F90
+R100    kessler/kessler_update.meta                        schemes/kessler/kessler_update.meta
+R100    musica/micm/micm_util.F90                          schemes/musica/micm/micm_util.F90
+R100    musica/micm/musica_ccpp_micm.F90                   schemes/musica/micm/musica_ccpp_micm.F90
+R100    musica/musica_ccpp.F90                             schemes/musica/musica_ccpp.F90
+R100    musica/musica_ccpp.meta                            schemes/musica/musica_ccpp.meta
+R100    musica/musica_ccpp_namelist.xml                    schemes/musica/musica_ccpp_namelist.xml
+R100    musica/musica_ccpp_util.F90                        schemes/musica/musica_ccpp_util.F90
+R100    musica/tuvx/musica_ccpp_tuvx.F90                   schemes/musica/tuvx/musica_ccpp_tuvx.F90
+R100    tj2016/tj2016_precip.F90                           schemes/tj2016/tj2016_precip.F90
+R100    tj2016/tj2016_precip.meta                          schemes/tj2016/tj2016_precip.meta
+R100    tj2016/tj2016_sfc_pbl_hs.F90                       schemes/tj2016/tj2016_sfc_pbl_hs.F90
+R100    tj2016/tj2016_sfc_pbl_hs.meta                      schemes/tj2016/tj2016_sfc_pbl_hs.meta
+R100    tropopause_find/tropopause_find.F90                schemes/tropopause_find/tropopause_find.F90
+R100    tropopause_find/tropopause_find.meta               schemes/tropopause_find/tropopause_find.meta
+R100    utilities/geopotential_temp.F90                    schemes/utilities/geopotential_temp.F90
+R100    utilities/geopotential_temp.meta                   schemes/utilities/geopotential_temp.meta
+R100    utilities/physics_tendency_updaters.F90            schemes/utilities/physics_tendency_updaters.F90
+R100    utilities/physics_tendency_updaters.meta           schemes/utilities/physics_tendency_updaters.meta
+R100    utilities/qneg.F90                                 schemes/utilities/qneg.F90
+R100    utilities/qneg.meta                                schemes/utilities/qneg.meta
+R100    utilities/qneg_namelist.xml                        schemes/utilities/qneg_namelist.xml
+R100    utilities/state_converters.F90                     schemes/utilities/state_converters.F90
+R100    utilities/state_converters.meta                    schemes/utilities/state_converters.meta
+R100    utilities/static_energy.F90                        schemes/utilities/static_energy.F90
+R100    utilities/static_energy.meta                       schemes/utilities/static_energy.meta
+R100    zhang_mcfarlane/zm_conv_convtran.F90               schemes/zhang_mcfarlane/zm_conv_convtran.F90
+R100    zhang_mcfarlane/zm_conv_convtran.meta              schemes/zhang_mcfarlane/zm_conv_convtran.meta
+R100    zhang_mcfarlane/zm_conv_evap.F90                   schemes/zhang_mcfarlane/zm_conv_evap.F90
+R100    zhang_mcfarlane/zm_conv_evap.meta                  schemes/zhang_mcfarlane/zm_conv_evap.meta
+R100    zhang_mcfarlane/zm_conv_momtran.F90                schemes/zhang_mcfarlane/zm_conv_momtran.F90
+R100    zhang_mcfarlane/zm_conv_momtran.meta               schemes/zhang_mcfarlane/zm_conv_momtran.meta
+R100    zhang_mcfarlane/zm_convr.F90                       schemes/zhang_mcfarlane/zm_convr.F90
+R100    zhang_mcfarlane/zm_convr.meta                      schemes/zhang_mcfarlane/zm_convr.meta
+
+- Update CMake path to point to new directory location (found during testing):
+M       test/CMakeLists.txt
+
+List and Describe any test failures: N/A
+
+Summarize any changes to answers: none
+
+===============================================================
+
+Tag name: atmos_phys0_05_000
 Originator(s): jimmielin
 Date: August 22, 2024
 One-line Summary: tropopause_find CCPP-ization

test/CMakeLists.txt

@@ -11,7 +11,7 @@ set(CMAKE_USER_MAKE_RULES_OVERRIDE ${CMAKE_MODULE_PATH}/SetDefaults.cmake)
 set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR})
 
 # --------------------------------------------------------------------------------
-# NOTE: If 'CCPP_ENABLE_MUSICA_TESTS' on, this is not a stand-alone cmake project anymore. 
+# NOTE: If 'CCPP_ENABLE_MUSICA_TESTS' on, this is not a stand-alone cmake project anymore.
 #       MUSICA CCPP wrapper needs MUSICA library and ccpp-framework/src.
 #       To 'CCPP_ENABLE_MUSICA_TESTS', you either build a cmake project through
 #       'docker/Dockerfile.musica' or follow the build instructions in the file.
@@ -25,7 +25,7 @@ set(BUILD_GMOCK OFF CACHE BOOL "" FORCE)
 
 if (CCPP_ENABLE_MUSICA_TESTS)
   set(MUSICA_VERSION $ENV{MUSICA_VERSION})
-  set(MUSICA_SRC_PATH ${CMAKE_SOURCE_DIR}/../musica)
+  set(MUSICA_SRC_PATH ${CMAKE_SOURCE_DIR}/../schemes/musica)
   set(CCPP_SRC_PATH ${CMAKE_SOURCE_DIR}/$ENV{CCPP_SRC_PATH})
   set(CCPP_TEST_SRC_PATH ${CMAKE_SOURCE_DIR}/include)