Consolidate duplicated crop phenology code

Consolidate duplicated crop phenology code

…to jedwards/neon_updates

This tag provides the FATES model access to the fcansno variable to facilitate a correction
of it's radiation transfer code.

 Conflicts:
	Externals.cfg

This tag facilitates updates to FATES history variable names, units, other metadata,
and flushing behavior. Variables are now initially flushed to the CTSM ignore value,
then flushed to 0.0 on the FATES side.

Calls were added to flush_hvars and zero_site_hvars inside the
init_coldstart and restart subroutines in clmfates_interfaceMod.F90.
FATES history variables names were updated to the new names in the
user_nl_clm hist_fincl1 lists in the testmods directory.

This tag facilitates updates to FATES history variable names, units, other metadata,
and flushing behavior. Variables are now initially flushed to the CTSM ignore value,
then flushed to 0.0 on the FATES side.

Calls were added to flush_hvars and zero_site_hvars inside the
init_coldstart and restart subroutines in clmfates_interfaceMod.F90.
FATES history variables names were updated to the new names in the
user_nl_clm hist_fincl1 lists in the testmods directory.

This tag refactors the static fire data input methodology to enable a future anthropogenic fire suppression
methodology to FATES as described NGEET/fates#673. This future method requires that FATES have access to
GDP data that was previously defined in CNVegStateType.F90 as part of cnveg_state_type.  As such, the GDP
variable has been moved into fire_base_type in FireDataBaseType.F90 to provide the data to the extended
fates_fire_base_type for eventual use in FATES.  Similarly, the surface dataset read subroutine has been
moved along with the peat and ag-fire variables, which utilize the same read subroutine and where also
originally part of the cnveg_state_type.

…dify_surf

modified:   tools/site_and_regional/modify_singlept_site_neon.py

…wards/neon_updates

…n_modify_surf

ESMF_LIBDIR is deprecated; the preferred method for specifying the path
to ESMF is now to use ESMFMKFILE. And the latter is needed for a check
in the CMEPS buildnml; see also
ESCOMP#1498

config_compilers.xml is deprecated; need a cmake macros file instead.

Resolves ESCOMP#1492

… versions this fixes ESCOMP#1550

…uration, now needs to be after the radiation time-step this fixes ESCOMP#1563

This set of changes synchronizes CTSM with API 20 of FATES.  API 20 of FATES requires a modification to timing boundary conditions so that FATES can maintain its own internal running means.  FATES also no-longer asks CTSM for the 24hour vegetation temperature, since this is a patch(pft) level variable, and FATES has more suitable averaging mechanisms.  These changes are synchronized with FATES Pull Request: NGEET/fates#724, which subsequently created tag: https://github.com/NGEET/fates/releases/tag/sci.1.52.0_api.20.0.0

…edwards/neon_updates

…_steps

… script and exclude the pytlint file, also have pylint ignore an option that black uses so they are compatable

…s/neon_updates

…to jedwards/neon_updates

…master list

… a config file for it

…n error code up the chain and the code can die rather than going on as if an error didn't happen

…negative longitude this fixes ESCOMP#1574