Few fixes

components/elm/docs/user-guide/index.md

@@ -81,7 +81,6 @@ provides guidance on enabling these different FATES run modes.
 
 A new surface dataset for ELM is generated using `mksurfdata_map` and the notes about it are available [here](surface_dataset.md)
 
-
 ## Generate land initial condition
 
-Initial ELM condition can be generated using `interpinic` and the notes about it are available [here](interpinic.md).
+Initial ELM condition can be generated using `interpinic` and the notes about it are available [here](interpinic.md).

components/elm/docs/user-guide/interpinic.md

@@ -19,15 +19,15 @@ The notes below provide an example of creating 1850 ELM IC file for the NARRM gr
 
 The identified input land condition file for this case is the following:
 
-```
+```bash
 /lcrc/group/e3sm2/ac.golaz/E3SMv3/v3.LR.piControl/archive/rest/0101-01-01-00000/v3.LR.piControl.elm.r.0101-01-01-00000.nc
 ```
 
 ## 2. Obtaining an ELM restart file
 
 Using an existing NARRM land IC and making a copy of it
 
-```
+```bash
 cd components/elm/tools/interpinic
 
 cp /lcrc/group/e3sm/data/inputdata/lnd/clm2/initdata_map/elmi.v3-NARRM.northamericax4v1pg2_r025_IcoswISC30E3r5.1870-01-01-00000.c20240704.nc \
@@ -36,7 +36,7 @@ elmi.v3-NARRM.northamericax4v1pg2_r025_IcoswISC30E3r5.1850-01-01-00000.c`date "+
 
 ## 3. Compiling `interpinic`
 
-```
+```bash
 # Load relevant modules
 cd <e3sm-dir>
 eval $(./cime/CIME/Tools/get_case_env)
@@ -47,14 +47,13 @@ cd components/elm/tools/interpinic/src
 export USER_LDFLAGS="-L$NETCDF_C_DIR/lib -lnetcdf -L$NETCDF_F_DIR/lib -lnetcdff  -L$HDF5_DIR/lib -lhdf5"
 
 USER_FC=ifort LIB_NETCDF="`nc-config --flibs`" INC_NETCDF="`nf-config --includedir`" make VERBOSE=1
-
 ```
 
 ## 4. Run `interpinic`
 
 The `interpinic ` can then be run via the following batch job (e.g., `remap.r025_RRSwISC6to18E3r4.1850.batch`) to generate the initial condition.
 
-```
+```bash
 >cat remap.r025_RRSwISC6to18E3r4.1850.batch
 
 #!/bin/sh
@@ -76,4 +75,3 @@ srun -n 1 ./interpinic \
 -i /lcrc/group/e3sm2/ac.golaz/E3SMv3/v3.LR.piControl/archive/rest/0101-01-01-00000/v3.LR.piControl.elm.r.0101-01-01-00000.nc \
 -o elmi.v3-NARRM.northamericax4v1pg2_r025_IcoswISC30E3r5.1850-01-01-00000.c20240903.nc
 ```
-

components/elm/docs/user-guide/surface_dataset.md

@@ -2,16 +2,16 @@
 
 The notes describe the steps in creating an ELM surface dataset at 0.5x0.5 resolution for 1950 on Perlmutter.
 
-1. Load the appropriate modules.
+## 1. Load the appropriate modules.
 
-```
+```bash
 cd <e3ms-dir>
 eval $(./cime/CIME/Tools/get_case_env)
 ```
 
-2. Compile `mksurfdata_map`.
+## 2. Compile `mksurfdata_map`.
 
-```
+```bash
 cd components/elm/tools/mksurfdata_map/src/
 
 make clean
@@ -25,7 +25,7 @@ USER_FC=ifort LIB_NETCDF="`nc-config --flibs`" INC_NETCDF="`nf-config --included
 If the surface dataset is being created for an unsupported resolution, 16 mapping files will have to be created to map the raw datasets
 onto this unsupported resolution.
 
-```
+```bash
 cd ../
 
 RES=0.5x0.5
@@ -38,12 +38,12 @@ mv namelist namelist.$RES.$YR
 
 4. Run `mksurfdata_map` via an interactive job.
 
-```
+```bash
 salloc --nodes 1 --qos interactive --time 01:00:00 --constraint cpu --account e3sm
 
 RES=0.5x0.5
 YR=1950
 NAMELIST=namelist.$RES.$YR
 
 srun -n 1 ./mksurfdata_map < $NAMELIST
-```
+```