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Update chicoma-cpu modules #112

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Update chicoma-cpu modules #112

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5b539bc
Update chicoma-cpu modules
xylar Oct 11, 2024
a1d98a7
Add latest cmake
xylar Oct 14, 2024
9c0b308
Updates to get E3SM working on chicoma-cpu
jonbob Oct 17, 2024
c5552b9
Update nvidia modules
xylar Oct 19, 2024
ca87958
Add GNU_CRAY_LDFLAGS flag to MPAS standalone builds
xylar Oct 21, 2024
d379003
Revert chicoma-gpu changes (for now)
xylar Oct 21, 2024
c34336e
Update gcc and nvidia to newer versions
xylar Oct 21, 2024
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1 change: 1 addition & 0 deletions cime_config/machines/cmake_macros/gnu_chicoma-cpu.cmake
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@ endif()
set(PIO_FILESYSTEM_HINTS "lustre")
string(APPEND CMAKE_C_FLAGS_RELEASE " -O2 -g")
string(APPEND CMAKE_Fortran_FLAGS_RELEASE " -O2 -g")
string(APPEND CMAKE_EXE_LINKER_FLAGS " -Wl,--enable-new-dtags")
set(MPICC "cc")
set(MPICXX "CC")
set(MPIFC "ftn")
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57 changes: 36 additions & 21 deletions cime_config/machines/config_machines.xml
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Expand Up @@ -3937,7 +3937,7 @@ commented out until "*** No rule to make target '.../libadios2pio-nm-lib.a'" iss
<DIN_LOC_ROOT_CLMFORC>/usr/projects/e3sm/inputdata/atm/datm7</DIN_LOC_ROOT_CLMFORC>
<DOUT_S_ROOT>/lustre/scratch5/$ENV{USER}/E3SM/archive/$CASE</DOUT_S_ROOT>
<BASELINE_ROOT>/lustre/scratch5/$ENV{USER}/E3SM/input_data/ccsm_baselines/$COMPILER</BASELINE_ROOT>
<CCSM_CPRNC>/usr/projects/climate/SHARED_CLIMATE/software/badger/cprnc</CCSM_CPRNC>
<CCSM_CPRNC>/usr/projects/e3sm/software/chicoma-cpu/cprnc</CCSM_CPRNC>
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Oh, I bet I know what happened here. I deleted this thinking that it was old and no longer used. In my defense, it has badger in the path...

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And it no longer exists! Not just the machine but that file. But I think if that line is missing it forces each test to try to build it

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And it no longer exists!

That's what I was saying. I think I deleted it trying to free up space in /usr/projects/climate because I couldn't imagine we were still using software built for Badger.

<GMAKE_J>10</GMAKE_J>
<TESTS>e3sm_developer</TESTS>
<NTEST_PARALLEL_JOBS>4</NTEST_PARALLEL_JOBS>
Expand All @@ -3957,11 +3957,11 @@ commented out until "*** No rule to make target '.../libadios2pio-nm-lib.a'" iss
</arguments>
</mpirun>
<module_system type="module" allow_error="true">
<init_path lang="perl">/usr/share/lmod/8.3.1/init/perl</init_path>
<init_path lang="perl">/usr/share/lmod/lmod/init/perl</init_path>
<!-- does not exist -->
<init_path lang="python">/usr/share/lmod/8.3.1/init/python</init_path>
<init_path lang="sh">/usr/share/lmod/8.3.1/init/sh</init_path>
<init_path lang="csh">/usr/share/lmod/8.3.1/init/csh</init_path>
<init_path lang="python">/usr/share/lmod/lmod/init/python</init_path>
<init_path lang="sh">/usr/share/lmod/lmod/init/sh</init_path>
<init_path lang="csh">/usr/share/lmod/lmod/init/csh</init_path>
<cmd_path lang="perl">/usr/share/lmod/lmod/libexec/lmod perl</cmd_path>
<cmd_path lang="python">/usr/share/lmod/lmod/libexec/lmod python</cmd_path>
<cmd_path lang="sh">module</cmd_path>
Expand All @@ -3973,26 +3973,27 @@ commented out until "*** No rule to make target '.../libadios2pio-nm-lib.a'" iss
<command name="unload">cray-parallel-netcdf</command>
<command name="unload">cray-netcdf</command>
<command name="unload">cray-hdf5</command>
Comment on lines 3973 to 3975
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I tried removing cpe like Noel did here:
https://github.com/E3SM-Project/E3SM/blob/bdcc2f551cfae2fca53bd8aa4ec604601ddf1c68/cime_config/machines/config_machines.xml#L193
But I got nasty error like:

        Lmod has detected the following error: These module(s) or extension(s) exist
        but cannot be loaded as requested: "git", "cmake/3.27.7"
           Try: "module spider git cmake/3.27.7" to see how to load the module(s).

<command name="unload">PrgEnv-gnu</command>
<command name="unload">PrgEnv-intel</command>
<command name="unload">PrgEnv-nvidia</command>
<command name="unload">PrgEnv-cray</command>
<command name="unload">PrgEnv-aocc</command>
<command name="unload">intel</command>
<command name="unload">intel-oneapi</command>
<command name="unload">nvidia</command>
<command name="unload">aocc</command>
<command name="unload">cudatoolkit</command>
<command name="unload">climate-utils</command>
<command name="unload">cray-libsci</command>
<command name="unload">craype-accel-nvidia80</command>
<command name="unload">craype-accel-host</command>
<command name="unload">perftools-base</command>
<command name="unload">perftools</command>
<command name="unload">darshan</command>
<command name="unload">PrgEnv-gnu</command>
<command name="unload">PrgEnv-intel</command>
<command name="unload">PrgEnv-nvidia</command>
<command name="unload">PrgEnv-cray</command>
<command name="unload">PrgEnv-aocc</command>
Comment on lines +3990 to +3994
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I found that these needed to be unloaded after their corresponding compiler modules or there would be an error about an undefined environment variable name.

</modules>

<modules compiler="gnu">
<command name="load">PrgEnv-gnu/8.4.0</command>
<command name="load">PrgEnv-gnu/8.5.0</command>
<command name="load">gcc/12.2.0</command>
<command name="load">cray-libsci/23.05.1.4</command>
</modules>
Expand All @@ -4004,8 +4005,8 @@ commented out until "*** No rule to make target '.../libadios2pio-nm-lib.a'" iss
</modules>

<modules compiler="intel">
<command name="load">PrgEnv-intel/8.4.0</command>
<command name="load">intel-classic/2023.2.0</command>
<command name="load">PrgEnv-intel/8.5.0</command>
<command name="load">intel/2023.2.0</command>
</modules>

<modules compiler="amdclang">
Expand All @@ -4014,15 +4015,26 @@ commented out until "*** No rule to make target '.../libadios2pio-nm-lib.a'" iss
<command name="load">cray-libsci/23.05.1.4</command>
</modules>

<modules>
<modules compiler="intel">
<command name="load">craype-accel-host</command>
<command name="load">craype/2.7.30</command>
<command name="load">cray-mpich/8.1.28</command>
<command name="load">cray-hdf5-parallel/1.12.2.9</command>
<command name="load">cray-netcdf-hdf5parallel/4.9.0.9</command>
<command name="load">cray-parallel-netcdf/1.12.3.9</command>
</modules>

<modules compiler="!intel">
<command name="load">craype-accel-host</command>
<command name="load">craype/2.7.21</command>
<command name="load">cray-mpich/8.1.26</command>
<command name="load">libfabric/1.15.2.0</command>
<command name="load">cray-hdf5-parallel/1.12.2.3</command>
<command name="load">cray-netcdf-hdf5parallel/4.9.0.3</command>
<command name="load">cray-parallel-netcdf/1.12.3.3</command>
<command name="load">cmake/3.25.1</command>
</modules>

<modules>
<command name="load">cmake/3.27.7</command>
</modules>
</module_system>

Expand All @@ -4044,6 +4056,9 @@ commented out until "*** No rule to make target '.../libadios2pio-nm-lib.a'" iss
<env name="NETCDF_PATH">$ENV{CRAY_NETCDF_HDF5PARALLEL_PREFIX}</env>
<env name="PNETCDF_PATH">$ENV{CRAY_PARALLEL_NETCDF_PREFIX}</env>
</environment_variables>
<environment_variables compiler="gnu">
<env name="LD_LIBRARY_PATH">/opt/cray/pe/gcc/12.2.0/snos/lib64:$ENV{LD_LIBRARY_PATH}</env>
</environment_variables>
<resource_limits>
<resource name="RLIMIT_STACK">-1</resource>
</resource_limits>
Expand Down Expand Up @@ -4085,11 +4100,11 @@ AMD EPYC 7713 64-Core (Milan) (256GB) and 4 nvidia A100'</DESC>
</arguments>
</mpirun>
<module_system type="module" allow_error="true">
<init_path lang="perl">/usr/share/lmod/8.3.1/init/perl</init_path>
<init_path lang="perl">/usr/share/lmod/lmod/init/perl</init_path>
<!-- does not exist -->
<init_path lang="python">/usr/share/lmod/8.3.1/init/python</init_path>
<init_path lang="sh">/usr/share/lmod/8.3.1/init/sh</init_path>
<init_path lang="csh">/usr/share/lmod/8.3.1/init/csh</init_path>
<init_path lang="python">/usr/share/lmod/lmod/init/python</init_path>
<init_path lang="sh">/usr/share/lmod/lmod/init/sh</init_path>
<init_path lang="csh">/usr/share/lmod/lmod/init/csh</init_path>
<cmd_path lang="perl">/usr/share/lmod/lmod/libexec/lmod perl</cmd_path>
<cmd_path lang="python">/usr/share/lmod/lmod/libexec/lmod python</cmd_path>
<cmd_path lang="sh">module</cmd_path>
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Expand Down Expand Up @@ -4156,7 +4171,7 @@ AMD EPYC 7713 64-Core (Milan) (256GB) and 4 nvidia A100'</DESC>
<command name="load">cray-hdf5-parallel/1.12.2.3</command>
<command name="load">cray-netcdf-hdf5parallel/4.9.0.3</command>
<command name="load">cray-parallel-netcdf/1.12.3.3</command>
<command name="load">cmake/3.25.1</command>
<command name="load">cmake/3.27.7</command>
</modules>
</module_system>

Expand Down