Installing on Jetson Xavier AGX #8
Comments
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I've had a heck of a time getting it to run on my Jetson as well. Once I finally got it up and running, I found that I couldn't get it to run CSI cameras because I couldn't figure out how to modify the opencv code. I'm just about done with everything Jetson-related. Seems like 10% of my time on them is actually normal function, and 90% endless tabs of stack exchange troubleshooting. |
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@arge-7 Yes, I feel your pain... and yet, the Jetson looks such a good fit for this it may be worth one more attempt. |
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Hmmm... maybe libhdf5-serial-dev is missing from the dependencies? I will try tomorrow. |
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Also can you try installing directly from github: |
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pip install git+https://github.com/DeepLabCut/DeepLabCut-live-GUI Runs into -- Running setup.py install for tables ... error |
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My bad -- tables is still a dependency for DeepLabCut-live-GUI on Jetson, but it shouldn't be for DeepLabCut-live. You could try to install just deeplabcut-live from github: |
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So does deeplabcut-live work for you? I remember that when I was having trouble getting the GUI version to run, I fixed it by doing a clean installation of live and then live GUI, mostly per the Github instructions except for some dependency annoyances. |
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Yes, earlier steps completed. It seems HDF5 gets installed in a non-standard location. Trying to see if I can fix with an environment variable (HDF5_DIR) pointing in the right direction. |
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Ok... that seemed to fix tables -- but now it got stuck downloading multiple versions of pretty much everthing to determiine compatibility requirements.... INFO: This is taking longer than usual. You might need to provide the dependency resolver with stricter constraints to reduce runtime. If you want to abort this run, you can press Ctrl + C to do so. To improve how pip performs, tell us what happened here: https://pip.pypa.io/surveys/backtracking |
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Oh well.... giving up on the Jetson for now. Happy to try again when installation kinks are worked out. @arge-7 did it work for you at least with USB cameras? |
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I actually never tried that because I needed to use specific raspberry pi IR cameras for my use case. I did get dlcllive and dlclivegui up and running eventually though. Just never got to use a camera with it. I may come back to trying to get the CSI cameras to work because I think I've found some code that will fix the problem. |
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HI all, be sure you are using python 3.6 not 3.8 btw! |
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I'm using 3.6.9 |
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Yoohoo... It worked! But it didn't install the check_install -- Did I skip something? |
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Will a model developed with tensorflow 1.13.1 run with DLC Live and tensorflow 1.15.4? |
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It generally should be the exact same, it’s not just 1 v 2 sadly |
All good until last step... and then:
(dlc-live) dario@dario-jetson:~$ pip install deeplabcut-live
Collecting deeplabcut-live
Downloading deeplabcut_live-1.0-py3-none-any.whl (28 kB)
Collecting numpy<1.19.0
Downloading numpy-1.18.5.zip (5.4 MB)
|████████████████████████████████| 5.4 MB 13.5 MB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... done
Collecting ruamel.yaml
Downloading ruamel.yaml-0.16.13-py2.py3-none-any.whl (111 kB)
|████████████████████████████████| 111 kB 9.9 MB/s
Collecting pillow
Downloading Pillow-8.1.2-cp36-cp36m-manylinux2014_aarch64.whl (2.1 MB)
|████████████████████████████████| 2.1 MB 14.9 MB/s
Collecting colorcet
Downloading colorcet-2.0.6-py2.py3-none-any.whl (1.6 MB)
|████████████████████████████████| 1.6 MB 15.5 MB/s
Collecting opencv-python
Downloading opencv_python-4.5.1.48-cp36-cp36m-manylinux2014_aarch64.whl (34.5 MB)
|████████████████████████████████| 34.5 MB 22 kB/s
Collecting tqdm
Downloading tqdm-4.59.0-py2.py3-none-any.whl (74 kB)
|████████████████████████████████| 74 kB 2.0 MB/s
Collecting tables
Downloading tables-3.6.1.tar.gz (4.6 MB)
|████████████████████████████████| 4.6 MB 12.9 MB/s
Collecting deeplabcut-live
Downloading deeplabcut_live-0.0.3-py3-none-any.whl (39 kB)
Collecting numpy
Downloading numpy-1.19.5-cp36-cp36m-manylinux2014_aarch64.whl (12.4 MB)
|████████████████████████████████| 12.4 MB 10.8 MB/s
Collecting deeplabcut-live
Downloading deeplabcut_live-0.0.2-py3-none-any.whl (42 kB)
|████████████████████████████████| 42 kB 404 kB/s
Downloading deeplabcut_live-0.0.1-py3-none-any.whl (29 kB)
Downloading deeplabcut_live-0.0-py3-none-any.whl (39 kB)
Collecting py-cpuinfo==5.0.0
Downloading py-cpuinfo-5.0.0.tar.gz (82 kB)
|████████████████████████████████| 82 kB 221 kB/s
Collecting pandas
Downloading pandas-1.1.5-cp36-cp36m-manylinux2014_aarch64.whl (9.5 MB)
|████████████████████████████████| 9.5 MB 9.4 MB/s
Collecting pyct>=0.4.4
Downloading pyct-0.4.8-py2.py3-none-any.whl (15 kB)
Collecting param>=1.7.0
Downloading param-1.10.1-py2.py3-none-any.whl (76 kB)
|████████████████████████████████| 76 kB 3.8 MB/s
Collecting pytz>=2017.2
Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB)
|████████████████████████████████| 510 kB 14.2 MB/s
Collecting python-dateutil>=2.7.3
Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
|████████████████████████████████| 227 kB 14.5 MB/s
Collecting six>=1.5
Downloading six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting ruamel.yaml.clib>=0.1.2
Downloading ruamel.yaml.clib-0.2.2-cp36-cp36m-manylinux2014_aarch64.whl (540 kB)
|████████████████████████████████| 540 kB 12.8 MB/s
Collecting numexpr>=2.6.2
Downloading numexpr-2.7.3-cp36-cp36m-manylinux2014_aarch64.whl (481 kB)
|████████████████████████████████| 481 kB 15.4 MB/s
Using legacy 'setup.py install' for py-cpuinfo, since package 'wheel' is not installed.
Using legacy 'setup.py install' for tables, since package 'wheel' is not installed.
Installing collected packages: six, param, numpy, ruamel.yaml.clib, pytz, python-dateutil, pyct, numexpr, tqdm, tables, ruamel.yaml, py-cpuinfo, pillow, pandas, colorcet, deeplabcut-live
Running setup.py install for tables ... error
ERROR: Command errored out with exit status -4:
command: /home/dario/dlc-live/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-p9_amnr6/tables_db97b7244bac4c15a79f2d6898028816/setup.py'"'"'; file='"'"'/tmp/pip-install-p9_amnr6/tables_db97b7244bac4c15a79f2d6898028816/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-wtlkb57w/install-record.txt --single-version-externally-managed --compile --install-headers /home/dario/dlc-live/include/site/python3.6/tables
cwd: /tmp/pip-install-p9_amnr6/tables_db97b7244bac4c15a79f2d6898028816/
Complete output (188 lines):
* Using Python 3.6.9 (default, Jan 26 2021, 15:33:00)
* USE_PKGCONFIG: True
* pkg-config header dirs for HDF5: /usr/include/hdf5/serial
* pkg-config library dirs for HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial
* Found HDF5 headers at
/usr/include/hdf5/serial, library at/usr/lib/aarch64-linux-gnu/hdf5/serial... WARNING:: Could not find the HDF5 runtime.
The HDF5 shared library was not found in the default library
paths. In case of runtime problems, please remember to install it.
/tmp/lzo_version_datesb8__dcy.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
main (int argc, char **argv) {
^~~~
/tmp/lzo_version_datesb8__dcy.c: In function ‘main’:
/tmp/lzo_version_datesb8__dcy.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration]
lzo_version_date();
^~~~~~~~~~~~~~~~
/usr/bin/ld: cannot find -llzo2
collect2: error: ld returned 1 exit status
* Could not find LZO 2 headers and library; disabling support for it.
/tmp/lzo_version_datewqm9562s.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
main (int argc, char **argv) {
^~~~
/tmp/lzo_version_datewqm9562s.c: In function ‘main’:
/tmp/lzo_version_datewqm9562s.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration]
lzo_version_date();
^~~~~~~~~~~~~~~~
/usr/bin/ld: cannot find -llzo
collect2: error: ld returned 1 exit status
* Could not find LZO 1 headers and library; disabling support for it.
/tmp/BZ2_bzlibVersionr8ji2103.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
main (int argc, char **argv) {
^~~~
/tmp/BZ2_bzlibVersionr8ji2103.c: In function ‘main’:
/tmp/BZ2_bzlibVersionr8ji2103.c:2:5: warning: implicit declaration of function ‘BZ2_bzlibVersion’ [-Wimplicit-function-declaration]
BZ2_bzlibVersion();
^~~~~~~~~~~~~~~~
/usr/bin/ld: cannot find -lbz2
collect2: error: ld returned 1 exit status
* Could not find bzip2 headers and library; disabling support for it.
/tmp/blosc_list_compressorsv4to05p7.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
main (int argc, char **argv) {
^~~~
/tmp/blosc_list_compressorsv4to05p7.c: In function ‘main’:
/tmp/blosc_list_compressorsv4to05p7.c:2:5: warning: implicit declaration of function ‘blosc_list_compressors’ [-Wimplicit-function-declaration]
blosc_list_compressors();
^~~~~~~~~~~~~~~~~~~~~~
/usr/bin/ld: cannot find -lblosc
collect2: error: ld returned 1 exit status
* Could not find blosc headers and library; using internal sources.
/usr/lib/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'extra_require'
warnings.warn(msg)
running install
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.6
creating build/lib.linux-aarch64-3.6/tables
copying tables/idxutils.py -> build/lib.linux-aarch64-3.6/tables
copying tables/leaf.py -> build/lib.linux-aarch64-3.6/tables
copying tables/vlarray.py -> build/lib.linux-aarch64-3.6/tables
copying tables/node.py -> build/lib.linux-aarch64-3.6/tables
copying tables/flavor.py -> build/lib.linux-aarch64-3.6/tables
copying tables/filters.py -> build/lib.linux-aarch64-3.6/tables
copying tables/carray.py -> build/lib.linux-aarch64-3.6/tables
copying tables/atom.py -> build/lib.linux-aarch64-3.6/tables
copying tables/conditions.py -> build/lib.linux-aarch64-3.6/tables
copying tables/parameters.py -> build/lib.linux-aarch64-3.6/tables
copying tables/utils.py -> build/lib.linux-aarch64-3.6/tables
copying tables/file.py -> build/lib.linux-aarch64-3.6/tables
copying tables/registry.py -> build/lib.linux-aarch64-3.6/tables
copying tables/indexes.py -> build/lib.linux-aarch64-3.6/tables
copying tables/link.py -> build/lib.linux-aarch64-3.6/tables
copying tables/init.py -> build/lib.linux-aarch64-3.6/tables
copying tables/index.py -> build/lib.linux-aarch64-3.6/tables
copying tables/earray.py -> build/lib.linux-aarch64-3.6/tables
copying tables/array.py -> build/lib.linux-aarch64-3.6/tables
copying tables/description.py -> build/lib.linux-aarch64-3.6/tables
copying tables/attributeset.py -> build/lib.linux-aarch64-3.6/tables
copying tables/exceptions.py -> build/lib.linux-aarch64-3.6/tables
copying tables/table.py -> build/lib.linux-aarch64-3.6/tables
copying tables/group.py -> build/lib.linux-aarch64-3.6/tables
copying tables/expression.py -> build/lib.linux-aarch64-3.6/tables
copying tables/unimplemented.py -> build/lib.linux-aarch64-3.6/tables
copying tables/undoredo.py -> build/lib.linux-aarch64-3.6/tables
copying tables/req_versions.py -> build/lib.linux-aarch64-3.6/tables
copying tables/path.py -> build/lib.linux-aarch64-3.6/tables
creating build/lib.linux-aarch64-3.6/tables/nodes
copying tables/nodes/filenode.py -> build/lib.linux-aarch64-3.6/tables/nodes
copying tables/nodes/init.py -> build/lib.linux-aarch64-3.6/tables/nodes
creating build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_expression.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_indexvalues.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/create_backcompat_indexes.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_tablesMD.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/common.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_timestamps.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_do_undo.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_timetype.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_suite.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_enum.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_hdf5compat.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_carray.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_attributes.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_garbage.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_earray.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_basics.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_tables.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_indexes.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_aux.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_types.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/init.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_queries.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_array.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_utils.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_create.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_nestedtypes.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_lists.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_index_backcompat.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_backcompat.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_numpy.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_vlarray.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/check_leaks.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_tree.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_links.py -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_all.py -> build/lib.linux-aarch64-3.6/tables/tests
creating build/lib.linux-aarch64-3.6/tables/misc
copying tables/misc/proxydict.py -> build/lib.linux-aarch64-3.6/tables/misc
copying tables/misc/enum.py -> build/lib.linux-aarch64-3.6/tables/misc
copying tables/misc/init.py -> build/lib.linux-aarch64-3.6/tables/misc
creating build/lib.linux-aarch64-3.6/tables/scripts
copying tables/scripts/pttree.py -> build/lib.linux-aarch64-3.6/tables/scripts
copying tables/scripts/ptrepack.py -> build/lib.linux-aarch64-3.6/tables/scripts
copying tables/scripts/ptdump.py -> build/lib.linux-aarch64-3.6/tables/scripts
copying tables/scripts/init.py -> build/lib.linux-aarch64-3.6/tables/scripts
copying tables/scripts/pt2to3.py -> build/lib.linux-aarch64-3.6/tables/scripts
creating build/lib.linux-aarch64-3.6/tables/nodes/tests
copying tables/nodes/tests/test_filenode.py -> build/lib.linux-aarch64-3.6/tables/nodes/tests
copying tables/nodes/tests/init.py -> build/lib.linux-aarch64-3.6/tables/nodes/tests
copying tables/tests/itemsize.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/vlstr_attr.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/elink.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/bug-idx.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/idx-std-1.x.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/zerodim-attrs-1.3.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/indexes_2_0.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/ex-noattr.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/float.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_i64le.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_unsupptype.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/Tables_lzo1_shuffle.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/times-nested-be.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/Tables_lzo2.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_i32be.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/Tables_lzo2_shuffle.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/vlunicode_endian.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/blosc_bigendian.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/issue_368.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/time-table-vlarray-1_x.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/nested-type-with-gaps.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_enum.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/python2.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/non-chunked-table.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/oldflavor_numeric.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_f64le.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/array_mdatom.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_f64be.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_szip.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/scalar.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/slink.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_SDSextendible.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_i64be.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/issue_560.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_compound_chunked.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/indexes_2_1.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/Tables_lzo1.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/flavored_vlarrays-format1.6.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/smpl_i32le.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/attr-u16.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/elink2.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/python3.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/zerodim-attrs-1.4.h5 -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_ref_array2.mat -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/matlab_file.mat -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/tests/test_ref_array1.mat -> build/lib.linux-aarch64-3.6/tables/tests
copying tables/nodes/tests/test_filenode.dat -> build/lib.linux-aarch64-3.6/tables/nodes/tests
copying tables/nodes/tests/test_filenode.xbm -> build/lib.linux-aarch64-3.6/tables/nodes/tests
copying tables/nodes/tests/test_filenode_v1.h5 -> build/lib.linux-aarch64-3.6/tables/nodes/tests
running build_ext
----------------------------------------
ERROR: Command errored out with exit status -4: /home/dario/dlc-live/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-p9_amnr6/tables_db97b7244bac4c15a79f2d6898028816/setup.py'"'"'; file='"'"'/tmp/pip-install-p9_amnr6/tables_db97b7244bac4c15a79f2d6898028816/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-wtlkb57w/install-record.txt --single-version-externally-managed --compile --install-headers /home/dario/dlc-live/include/site/python3.6/tables Check the logs for full command output.
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