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.gitignore
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l
l.1
l2
treecompare2.c~
*.o
*.Po
clann
config.h
config.h
config.log
config.status
Makefile
config.h
examples/Clann_source_trees.ph
examples/Heuristic_result.txt
examples/NJ-tree.ph
examples/supertree.ps
examples/trees.ps
Makefile
dev_examples/RAxML_bestTree.renamed_p_cc101
dev_examples/RAxML_bestTree.renamed_p_cc111
dev_examples/Clann_source_trees.ph
dev_examples/prunedtrees.txt
dev_examples/RAxML_bestTree.renamed_p_cc101.ph
config.h
config.log
config.log
config.status
Makefile
dev_examples/labelledtree.ph
dev_examples/mapunknowns.input.ph
dev_examples/NJ-tree.ph
dev_examples/prunedtaxa.txt
dev_examples/prunedtrees_longest.txt
dev_examples/prunedtrees_rand.txt
dev_examples/sprdescr1.txt
dev_examples/SPRdistances.txt
dev_examples/sprpart1.ph
dev_examples/supertree.ps
dev_examples/testtrees.ph
dev_examples/tmp.ph
dev_examples/tmp2.ph
dev_examples/trees.ps
prunedtrees.txt
test.ph
supertree.ps
NJ-tree.ph
Heuristic_result.txt
trees.ps
t
prunedtree.ph
prunedtaxa.txt
average_consensus.nex
bootstrap.txt
coding.nex
consensus.ph
histogram.txt
MRP.tree
robinson-foulds.txt
top_alltrees.txt
yaptp.txt
index.html~
*.tree
*.deletedtax
examples/redo_delete/Remove_outlier_taxa.sh
examples/redo_delete/remove_outliers.R
examples/redo_delete/worked_example_1018.tree.pruned
examples/trees_to_redo_pruning.tar.gz
examples/redo_delete/showtrees.txt
examples/redo_delete/29599_trees_pruned_of_copies_and_outliers.txt
examples/redo_delete/29599_trees_pruned_of_copies_and_outliers.txt.zip
examples/Clann_small_source_trees.ph
examples/NJ-tree.ph.txt
examples/sourcetree_scores_dfit.txt
examples/sourcetree_scores.txt
examples/testtree.ph
examples/testtree.ph~
examples/Usertrees_result.txt
clann.dSYM/Contents/Info.plist
*.0
autom4te.cache/output.1
autom4te.cache/requests
autom4te.cache/traces.1
config.h.in~
configure.in~
otu
otu
config.h~
Makefile.am~
v4.2.0_origprintf_treecompare2.c
clann.log
prunedtrees_info.txt
all_raxml_bestTrees.txt
compile
prune_test.txt
prune_test.txt_info.txt
prune_test.txt_info.txt.zip
.DS_Store