mf2sqn

mf2sqn is used to convert OGMP masterfile into Sequin file in order to make submission to the NCBI.

This package is based on activities of the OGMP (i.e, priori to 2002), and becomes open source as part of MFannot.

Install

In order to run mf2sqn you need:

1. Install the PirObject library.
2. Install all the necessary PirModels.
3. Install NCBI tbl2asn tool.
4. Copy mf2sqn in one of your executable directory (e.g: a directory list in $PATH).
5. Define the MF2SQN_LIB environment variable in order to point on the lib directory.
6. The qualifs.pl file should be in a directory accessible by your PERL5LIB search path. It can be a subdirectory of the user's home directory or more generally one of the directories specified by perl's @INC array. A way to check which directories your perl executable will search is to type "perl -V" and to have a look at the content of @INC. You can add directories to this list by setting your PERL5LIB environment variable (or simply PERLLIB in certain cases, be careful).

Note: At this point the installation of mf2sqn was only tested on Unix systems (Ubuntu and CentOS).

Usage

In order to get the help page of mf2sqn you need to type mf2sqn -h in your terminal.

Contributing

Please see CONTRIBUTING and CONDUCT for details.

Credits

• All Contributors

License

GNU General Public License v3.0. Please see License File for more information.