Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in DataMask$new(.data, caller_env) : argument "caller_env" is missing, with no default #8

Closed
Aveglia opened this issue Oct 21, 2021 · 1 comment
Labels
documentation Improvements or additions to documentation

Comments

@Aveglia
Copy link
Owner

Aveglia commented Oct 21, 2021

I noticed I was getting an error with ggtree on some systems I set vAMPirus up on. This was caused by a conflict with the ggtree version, dplyr version and R version selected by conda while building the environment.

Here is how to fix the issue:

After you have built the vAMPirus environment using the .yml file provided:

  1. Activate vAMPirus environment:

conda activate vAMPirus

  1. Call R:

R

  1. We are going to downgrade the dplyr version:

devtools::install_version('dplyr',version='1.0.5')

Chose a mirror and install the right version of dplyr needed (v1.0.5) -- for some reason after i selected a mirror I recieved a message saying the package didnt exist, just re-run the command form step 4 and it should install fine.

If installation succesful then close out R and you should be good to test vAMPirus with the test commands!

Hopefully this fix works for everyone, please let me know if this does not work for anyone.

@Aveglia Aveglia added the documentation Improvements or additions to documentation label Oct 21, 2021
@Aveglia Aveglia pinned this issue Oct 21, 2021
@Aveglia
Copy link
Owner Author

Aveglia commented Dec 1, 2022

This should be no longer be an issue in v2.1.0

@Aveglia Aveglia closed this as completed Dec 1, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
documentation Improvements or additions to documentation
Projects
None yet
Development

No branches or pull requests

1 participant