example_readme_for_vAMPirus_Analysis_repo

In this directory you will find all necessary non-read files used to run the analyses and generate the results described in:

	Associated work: CITATION OF WORK HERE


This file includes:

	1. file1 -> this is the metadata/database file(s) used for the vAMPirus analysis
	2. vAMPirus.config -> the configuration file used for the vAMPirus analysis
    ... Any other files included

To run the same analysis using vAMPirus v1.0.1:

	1. INSTRUCTIONS FOR OBTAINING SEQUENCING DATA HERE
	2. Edit configurarion file with paths to any metadata files/databases
	3. Run vAMPirus with the following launch command:

		nextflow run vAMPirus.nf -c vAMPirus.config -profile "profile" --Analyze