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setup.py
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setup.py
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from setuptools import setup, find_packages
from codecs import open
from os import path
here = path.abspath(path.dirname(__file__))
with open(path.join(here, 'README.md'), encoding='utf-8') as f:
long_description = f.read()
setup(
name='mosna',
version='0.1.0',
description='multi-omics spatial network analysis library',
long_description=long_description,
long_description_content_type='text/markdown',
url = "https://github.com/AlexCoul/mosna",
author='Alexis Coullomb',
author_email='alexis.coullomb.pro@gmail.com',
license='GNU GPLv3',
classifiers=['Development Status :: 3 - Alpha',
'License :: OSI Approved :: GNU GPLv3',
'Programming Language :: Python :: 3.8',
'Operating System :: OS Independent'],
packages=find_packages(exclude=['build', 'docs', 'templates', 'data']),
include_package_data=True,
install_requires=['matplotlib', 'numpy', 'seaborn',
'pandas','scipy', 'statsmodels',
'scikit-image', 'scikit-learn', 'ipykernel',
'pyarrow', 'tqdm', 'napari', 'colorcet',
'composition_stats', 'tysserand', 'scikit-survival',
'igraph', 'leidenalg', 'openpyxl', 'odfpy',
'fastcluster', 'lifelines', 'hdbscan', 'umap-learn',
'dask', 'xgboost', 'gudhi', 'torch_geometric',
'scanorama', 'pycave',
# to fix:
#'torch_sparse',
# 'scanit @ git+https://github.com/zcang/SCAN-IT.git',
],
keywords = 'spatial networks cells transcriptomics'
)