mypublication.bib

@Article{Azad2015,
    author={Azad, A. K. M. and Lawen, Alfons and Keith, Jonathan M.},
    title={Prediction of signaling cross-talks contributing to acquired drug resistance in breast cancer cells by Bayesian statistical modeling},
    journal={BMC Systems Biology},
    year={2015},
    month={Jan},
    day={20},
    volume={9},
    number={1},
    pages={2},
    issn={1752-0509},
    doi={10.1186/s12918-014-0135-x},
    url={https://doi.org/10.1186/s12918-014-0135-x}
}

@article{azad2011prediction,
  title={Prediction of plant promoters based on hexamers and random triplet pair analysis},
  author={Azad, A. K. M. and Shahid, Saima and Noman, Nasimul and Lee, Hyunju},
  journal={Algorithms for Molecular Biology},
  volume={6},
  number={1},
  pages={19},
  year={2011},
  url = {https://doi.org/10.1186/1748-7188-6-19},
  publisher={BioMed Central}
}
@article{azad2013voting,
  title={Voting-based cancer module identification by combining topological and data-driven properties},
  author={Azad, A. K. M. and Lee, Hyunju},
  journal={PloS one},
  volume={8},
  number={8},
  pages={e70498},
  year={2013},
  url = {https://doi.org/10.1371/journal.pone.0070498},
  publisher={Public Library of Science}
}
@article{azad2017bayesian,
  title={Bayesian model of signal rewiring reveals mechanisms of gene dysregulation in acquired drug resistance in breast cancer},
  author={Azad, A. K. M. and Lawen, Alfons and Keith, Jonathan M},
  journal={PloS one},
  volume={12},
  number={3},
  pages={e0173331},
  year={2017},
  url = {https://doi.org/10.1371/journal.pone.0173331},
  publisher={Public Library of Science}
}
@incollection{azad2018cross,
  title={Cross-Talk Categorisations in Data-Driven Models of Signalling Networks: A System-Level View},
  author={Azad, A. K. M. and Lawen, Alfons and Keith, Jonathan M},
  booktitle={Gene Expression and Regulation in Mammalian Cells-Transcription From General Aspects},
  year={2018},
  url = {http://dx.doi.org/10.5772/intechopen.72408},
  publisher={InTech [\textbf{\color{blue} citation: 1}]}
}
@inproceedings{alyami2016neighborhood,
  title={The neighborhood MCMC sampler for learning Bayesian networks},
  author={Alyami, Salem A and Azad, A. K. M. and Keith, Jonathan M},
  booktitle={First International Workshop on Pattern Recognition},
  volume={10011},
  pages={100111K},
  year={2016},
  url = {http://dx.doi.org/10.1117/12.2242708},
  organization={International Society for Optics and Photonics}
}
@article{azad2020BiB,
    author = {Azad, A K M and Dinarvand, Mojdeh and Nematollahi, Alireza and Swift, Joshua and Lutze-Mann, Louise and Vafaee, Fatemeh},
    title = {A comprehensive integrated drug similarity resource for in-silico drug repositioning and beyond},
    journal = {Briefings in Bioinformatics},
    year = {2020},
    month = {06},
    issn = {1477-4054},
    url = {https://doi.org/10.1093/bib/bbaa126},
    note = {bbaa126}
}
@article{azad2020COVIDCDR,
  title={Integrative resource for network-based investigation of COVID-19 combinatoric drug repositioning and mechanism of action},
journal = {Patterns},
pages = {100325},
year = {2021},
issn = {2666-3899},
doi = {https://doi.org/10.1016/j.patter.2021.100325},
url = {https://www.sciencedirect.com/science/article/pii/S2666389921001732}
}
@article{azad2020CovTS,
  title={Real-time time-series modelling for prediction of COVID-19 spread and intervention assessment},
  author= {Rashidi, Taha Hossein and Shahriari, Siroos and Azad, A. K. M. and Vafaee, Fatemeh},
  journal={Scientific Reports, Nature publishing Group - Revision (Under Revision)},
  year={2020}
}
@article{azad2021Mortuza,
  title={Machine Learning Approach to Predicting COVID-19 Disease Severity Based on Clinical Blood Test Data: Statistical Analysis and Model Development},
  author = {Aktar, Sakifa and Ahamad, Md and Rashed-Al-Mahfuz, Md and Azad, AKM and Uddin, Shahadat and Kamal, AHM and Alyami, Salem A and Lin, Ping-l and Islam, Sheikh Mohammad Sariful and Quinn, Julian MW and Eapen, Valsamma and Moni, Mohammad Ali},
  journal={JMIR Medical Informatics},
  url = {https://doi.org/10.2196/25884},
  year={2021},
  volume={9},
  number={4}
}
@article{azad2021BCG,
  title={Effects of Bacille Calmette Guerin (BCG) Vaccination during COVID-19 Infection},
  author= {Chowdhury, Utpala Nanda and Faruqe, Md. Omar and Mehedy, Md and Ahmad, Shamim and Islam, M. Babul and Azad, AKM and Moni, Mohammad Ali},
  journal={Computers in Biology and Medicine},
  year={2021}
}
@Article{azad2021Asif,
   Author="Nashiry, M. A.  and Sumi, S. S.  and Sharif Shohan, M. U.  and Alyami, S. A.  and Azad, A. K. M.  and Moni, M. A. ",
   Title={{B}ioinformatics and system biology approaches to identify the diseasome and comorbidities complexities of {S}{A}{R}{S}-{C}o{V}-2 infection with the digestive tract disorders},
   Journal={Briefings in Bioinformatics},
   Year="2021",
   Month="May",
   url = {https://doi.org/10.1093/bib/bbab126},
  note = {bbab126}
}
@article{azad2021Salem,
  title={Discovering novel cancer bio-markers in acquired lapatinib resistance using Bayesian methods},
  author= {Azad, AKM and Alyami, Salem A},
  journal = {Briefings in Bioinformatics},
    year = {2021},
    month = {04},
    url = {https://doi.org/10.1093/bib/bbab137},
    note = {bbab137}
}
@article{azad2021Mahfuz,
  title={Clinically Applicable Machine Learning Approaches to Identify Attributes of Chronic Kidney Disease (CKD) for Use in Low-Cost Diagnostic Screening},
  author= {Rashed-Al-Mahfuz, Md and Haque, Abedul and Azad, AKM and Alyami, Salem A and Quinn, Julian M.W. and Moni, Mohammad Ali},
  journal={IEEE Journal of Translational Engineering in Health \& Medicine},
  year={2021},
  volume={9},
  number={},
  pages={1-11},
  doi={10.1109/JTEHM.2021.3073629}
}
@article{azad2021EEG,
  author={Islam, Md. Rabiul and Moni, Mohammad Ali and Islam, Md. Milon and Rashed-Al-Mahfuz, Md. and Islam, Md. Saiful and Hasan, Md. Kamrul and Hossain, Md. Sabir and Ahmad, Mohiuddin and Uddin, Shahadat and Azad, AKM and Alyami, Salem A. and Ahad, Md Atiqur Rahman and Lio, Pietro},
  journal={IEEE Access}, 
  title={Emotion Recognition from EEG Signal Focusing on Deep Learning and Shallow Learning Techniques}, 
  year={2021},
  volume={},
  number={},
  pages={1-1},
  doi={10.1109/ACCESS.2021.3091487}
}
@ARTICLE{9462086,
  author={Chakraborty, Partha and Ahmed, Sabbir and Yousuf, Mohammad Abu and Azad, Akm and Alyami, Salem A. and Moni, Mohammad Ali},
  journal={IEEE Access}, 
  title={A Human-Robot Interaction System Calculating Visual Focus of Human's Attention Level}, 
  year={2021},
  volume={},
  number={},
  pages={1-1},
  doi={10.1109/ACCESS.2021.3091642}
}
  
@article{azad2021XRay,
  title={Convolutional Neural Network Model to Detect COVID-19 Patients Utilizing Chest X-ray Images},
  author= {Satu, Md. Shahriare and Ahammed, Khair and Abedin, Mohammad Zoynul and Rahaman, Md. Auhidur and Islam, Sheikh Mohammed Shariful and Azad, AKM and Moni, Mohammad Ali},
  journal={Machine Learning with Applications - Submitted},
  year={2021}
}
@article{azad2021Zahid,
  title={Network based systems biology approach to identify diseasome and comorbidity associations of Systemic Sclerosis with Cancers},
  author= {Islam, Md. Khairul and Islam, Md. Rakibul and Islam, Md Zahidul and Rahman, Md. Habibur and Mamun, Md Mainul Islam and Azad, AKM and Moni, Mohammad Ali},
  journal={Journal of Personalized Medicine - Submitted},
  year={2021}
}
@article{azad2021Autism,
  title={Improved Transfer Learning-based Face Recognition Model to Detect Autistic Children at an Early Stage},
  author= {Akter, Tania and Khan, Md. Imran and Satu, Md. Shahriare and Ali, Mohammad Hanif and Uddin, Md. Jamal and Azad, AKM and Alyami, Salem A. and Ali, Sarwar  and Moni, Mohammad Ali},
  JOURNAL = {Brain Sciences},
VOLUME = {11},
YEAR = {2021},
NUMBER = {6},
ARTICLE-NUMBER = {734},
ISSN = {2076-3425},
DOI = {10.3390/brainsci11060734}
}
@article {Ahamad2021.04.16.21255618,
	author = {Ahamad, Md. Martuza and Aktar, Sakifa and Uddin, Md. Jamal and Rashed-Al-Mahfuz, Md. and Azad, AKM and Uddin, Shahadat and Alyami, Salem A. and Sarker, Iqbal H. and Li{\`o}, Pietro and Quinn, Julian M.W. and Moni, Mohammad Ali},
	title = {Adverse effects of COVID-19 vaccination: machine learning and statistical approach to identify and classify incidences of morbidity and post-vaccination reactogenicity},
	elocation-id = {2021.04.16.21255618},
	year = {2021},
	doi = {10.1101/2021.04.16.21255618},
	journal = {medRxiv}
}

@article{azad2019single,
  title={Single cell data explosion: Deep learning to the rescue},
  author={Azad, A. K. M. and Vafaee, Fatemeh},
  journal={arXiv},
  year={2019}
}
@article{azad2020BARD,
author = {Nyberg, Erik P. and Nicholson, Ann E. and Korb, Kevin B. and Wybrow, Michael and Zukerman, Ingrid and Mascaro, Steven and Thakur, Shreshth and Oshni Alvandi, Abraham and Riley, Jeff and Pearson, Ross and Morris, Shane and Herrmann, Matthieu and Azad, A.K.M. and Bolger, Fergus and Hahn, Ulrike and Lagnado, David},
title = {BARD: A Structured Technique for Group Elicitation of Bayesian Networks to Support Analytic Reasoning},
journal = {Risk Analysis},
volume = {n/a},
number = {n/a},
pages = {},
keywords = {Delphi process, probabilistic graphical models, probabilistic reasoning},
doi = {https://doi.org/10.1111/risa.13759},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/risa.13759}
}
@article{azad2018xtalkiis,
  title={XTalkiiS: a tool for finding data-driven cross-talks between intra-/inter-species pathways},
  author={Azad, A. K. M.},
  journal={BioRxiv},
  pages={437541},
  year={2018},
  publisher={Cold Spring Harbor Laboratory}
}
@article{azad2018kpgminer,
  title={KPGminer: A tool for retrieving pathway genes from KEGG pathway database},
  author={Azad, A. K. M.},
  journal={bioRxiv},
  pages={416131},
  year={2018},
  publisher={Cold Spring Harbor Laboratory}
}
@article{azad2018bnmcmc,
  title={BNMCMC: a software for learning and visualizing Bayesian networks using MCMC methods},
  author={Azad, A. K. M. and Alyami, Salem A and Keith, Jonathan M},
  journal={bioRxiv},
  pages={414953},
  year={2018},
  publisher={Cold Spring Harbor Laboratory}
}
@incollection{azad2017integrating,
  title={Integrating Heterogeneous Datasets for Cancer Module Identification},
  author={Azad, A. K. M.},
  booktitle={Bioinformatics},
  pages={119--137},
  year={2017},
  publisher={Springer}
}
@article{alyami2016uniform,
  title={Uniform Sampling of Directed and Undirected Graphs Conditional on Vertex Connectivity},
  author={Alyami, Salem A and Azad, A. K. M. and Keith, Jonathan M},
  journal={Electronic Notes in Discrete Mathematics},
  volume={53},
  pages={43--55},
  year={2016},
  publisher={Elsevier}
}
@misc{azadmisc2,
    title={Bayesian approach for modelling condition-specific signal rewiring reveals possible mechanism of gene dys-regulation in acquired resistance in breast cancer cell-lines},
    author="Azad, A. K. M. and Lawen, Alfons and Keith, Jonathan M.",
  HOWPUBLISHED={ISMB conference, Florida, USA},
  year={2016}
}
@misc{azadmisc3,
    title={Prediction of Drug-Resistive Cross-talks among Signaling Pathways in Breast Cancer by Bayesian Statistical Modeling},
    author="Azad, A. K. M. and Keith, Jonathan M.",
  HOWPUBLISHED={International Conference on Systems Biology, Melbourne, Australia},
  year={2014}
}
@misc{azadmisc4,
    title={Network Reconstruction Approach for Integrating Gene Expression and Copy Number Dataset},
    author={Azad, A. K. M. and Lee, Hyunju},
  HOWPUBLISHED={GIW conferrence, Busan, South Korea},
  year={2011}
}