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Variant annotation and filtration server ALAPY Genome Explorer (AGx)

Standalone server for VCF files annotated with RefSeq, dbSNP, ExAC, ClinVar, 1000 genomes, HGNC, ESP6500, predicted consequences, SIFT, PolyPhen

  • Supports modern browsers on computers, tablets and smartphones

  • Current GUI supports limited analysis functionality that now includes flexible filters and inheritance models with tumor/normal and trio analysis and two column sorting

  • GUI supports history and versioning of your filters, models, analyses and views,

  • You can exports results into sql, txt and csv formats of selected variants.

  • It is free for academic use. Please read EULA here.

Installation

  • We provide installation scripts for Linux systems here.
  • We provide installation wiki here.

Running

  • We provide scripts needed to start the server and add users on Linux systems here.

Usage

  • Please refer to our FAQ here and tutorials on ALAPY YouTube channel.

Please tell us what you think and how we can make it better.