{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":707336439,"defaultBranch":"main","name":"synbias","ownerLogin":"viralemergence","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-10-19T17:28:14.000Z","ownerAvatar":"https://github.com/avatars/u/63165233?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1697736496.0","currentOid":""},"activityList":{"items":[{"before":"fb5e0336d10aeb00a64da32650cb21c62ba42da1","after":"c9860be5c81ec124915a58389ad4bf6d6af692ff","ref":"refs/heads/main","pushedAt":"2024-05-09T17:15:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"New labels on Figure 4","shortMessageHtmlLink":"New labels on Figure 4"}},{"before":"35f8244194bc8808a0e346af88482e774a674cbd","after":"fb5e0336d10aeb00a64da32650cb21c62ba42da1","ref":"refs/heads/main","pushedAt":"2024-05-08T21:09:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"New figures for the paper","shortMessageHtmlLink":"New figures for the paper"}},{"before":"1a120034d7664b189182fb1238f45de66ce4e732","after":"35f8244194bc8808a0e346af88482e774a674cbd","ref":"refs/heads/main","pushedAt":"2024-04-17T14:30:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"GLM + figure for round 6","shortMessageHtmlLink":"GLM + figure for round 6"}},{"before":"a96acb03b4b5d60aa472ba1e012480d71aefa8b5","after":"1a120034d7664b189182fb1238f45de66ce4e732","ref":"refs/heads/main","pushedAt":"2024-04-02T13:43:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Tensor GAM","shortMessageHtmlLink":"Tensor GAM"}},{"before":"c6f6e73acfbea340d32277e3ad957187814943ee","after":"a96acb03b4b5d60aa472ba1e012480d71aefa8b5","ref":"refs/heads/main","pushedAt":"2024-03-21T14:11:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Code for per-strain analysis","shortMessageHtmlLink":"Code for per-strain analysis"}},{"before":"662d6fab7affdf7bebd8aaab70665995667c8e4f","after":"c6f6e73acfbea340d32277e3ad957187814943ee","ref":"refs/heads/main","pushedAt":"2024-03-15T20:17:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Simulation round 6!","shortMessageHtmlLink":"Simulation round 6!"}},{"before":"7a7536e6230781a4cc5fbfed23b04e8a30feb8be","after":"662d6fab7affdf7bebd8aaab70665995667c8e4f","ref":"refs/heads/main","pushedAt":"2024-03-14T21:17:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Update simulation_round5.R and add simulation_round6.qmd","shortMessageHtmlLink":"Update simulation_round5.R and add simulation_round6.qmd"}},{"before":"8fd63e4b4e659765ff16e788cdb05a67bdc71cc1","after":"7a7536e6230781a4cc5fbfed23b04e8a30feb8be","ref":"refs/heads/main","pushedAt":"2024-03-13T16:48:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"write per_strain.csv file with new metrics","shortMessageHtmlLink":"write per_strain.csv file with new metrics"}},{"before":"bde372fe134c789add2781d1a4862ad037e5b336","after":"8fd63e4b4e659765ff16e788cdb05a67bdc71cc1","ref":"refs/heads/main","pushedAt":"2024-03-12T13:43:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Add sensitivity analysis for 35th timestep data","shortMessageHtmlLink":"Add sensitivity analysis for 35th timestep data"}},{"before":"3bdc8e56fdb51a29dae94cac9d16e8eb57394242","after":"bde372fe134c789add2781d1a4862ad037e5b336","ref":"refs/heads/main","pushedAt":"2024-03-11T20:29:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Delete Presentations directory\n\nHTML reports are not helpful to keep in the git repo.","shortMessageHtmlLink":"Delete Presentations directory"}},{"before":"b040a50419bc2e583b0258010394b779e51cb3a2","after":"3bdc8e56fdb51a29dae94cac9d16e8eb57394242","ref":"refs/heads/main","pushedAt":"2024-03-11T20:28:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Update .gitignore","shortMessageHtmlLink":"Update .gitignore"}},{"before":"f990ea125b1f6e5ff618f37b4b4ed79048d38892","after":"b040a50419bc2e583b0258010394b779e51cb3a2","ref":"refs/heads/main","pushedAt":"2024-03-11T20:26:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Update .gitignore","shortMessageHtmlLink":"Update .gitignore"}},{"before":"0963498abb35f097f2ce02c0dfc0045a1549a675","after":"f990ea125b1f6e5ff618f37b4b4ed79048d38892","ref":"refs/heads/main","pushedAt":"2024-03-11T20:24:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Sensitivity analysis in Julia","shortMessageHtmlLink":"Sensitivity analysis in Julia"}},{"before":"56f1926cc3d9124cff26cedfaf9ea69d6192cd6a","after":"0963498abb35f097f2ce02c0dfc0045a1549a675","ref":"refs/heads/main","pushedAt":"2024-03-07T14:34:31.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Merge simulation round 5","shortMessageHtmlLink":"Merge simulation round 5"}},{"before":"ce81ba905eee3f464e4bd214fc7046e7eaa8aacb","after":"56f1926cc3d9124cff26cedfaf9ea69d6192cd6a","ref":"refs/heads/main","pushedAt":"2024-03-06T21:14:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Simulation round 5 summary results","shortMessageHtmlLink":"Simulation round 5 summary results"}},{"before":"6ec755c40011de83effbe3ea56ec9538d95c5790","after":"ce81ba905eee3f464e4bd214fc7046e7eaa8aacb","ref":"refs/heads/main","pushedAt":"2024-03-04T21:02:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Code for measuring 50% prevalence points","shortMessageHtmlLink":"Code for measuring 50% prevalence points"}},{"before":"390d5596b4477bf55c82e9927f805c4224b4af55","after":"6ec755c40011de83effbe3ea56ec9538d95c5790","ref":"refs/heads/main","pushedAt":"2024-02-29T02:11:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Code for simulation round 5","shortMessageHtmlLink":"Code for simulation round 5"}},{"before":"50cf1a5de352b96b84ebeb59eb9139ac071d5ee8","after":"390d5596b4477bf55c82e9927f805c4224b4af55","ref":"refs/heads/main","pushedAt":"2024-02-29T02:03:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Simulations round 5","shortMessageHtmlLink":"Simulations round 5"}},{"before":"734b125da9a66f01fd1389ca6ed71d336d87ffaf","after":"50cf1a5de352b96b84ebeb59eb9139ac071d5ee8","ref":"refs/heads/main","pushedAt":"2024-02-06T14:36:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Simulation round 4: lower transmission rate","shortMessageHtmlLink":"Simulation round 4: lower transmission rate"}},{"before":"b2d5395633b08017e2743d78a06d7acedbbf2594","after":"734b125da9a66f01fd1389ca6ed71d336d87ffaf","ref":"refs/heads/main","pushedAt":"2024-02-05T20:28:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Created a file structure\n\nNow everything is easy to find!","shortMessageHtmlLink":"Created a file structure"}},{"before":"3fdbf8bd515283c371f3bf25f4dc6821e052b6e3","after":"b2d5395633b08017e2743d78a06d7acedbbf2594","ref":"refs/heads/main","pushedAt":"2024-01-19T16:34:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Ran simulation rounds 2 and 3.","shortMessageHtmlLink":"Ran simulation rounds 2 and 3."}},{"before":"0ff95502577555640adf08e2acb03c99df8bb402","after":"3fdbf8bd515283c371f3bf25f4dc6821e052b6e3","ref":"refs/heads/main","pushedAt":"2024-01-17T15:50:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/viralemergence/synbias","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/viralemergence/synbias"}},{"before":"6d4915f017dc544ddd24c77ee0170e89a0d71117","after":"0ff95502577555640adf08e2acb03c99df8bb402","ref":"refs/heads/main","pushedAt":"2024-01-16T22:15:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Update parameter_space.qmd\n\nUpdate with code for simulation rounds 2 and 3","shortMessageHtmlLink":"Update parameter_space.qmd"}},{"before":"c66144cb0d4ecab7f2b5439edf36c203d9f31b5a","after":"6d4915f017dc544ddd24c77ee0170e89a0d71117","ref":"refs/heads/main","pushedAt":"2023-12-20T16:07:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Simulation round 1 results now available.","shortMessageHtmlLink":"Simulation round 1 results now available."}},{"before":"8055abb2690c998d673d1ce7eaf466e17d97c32a","after":"c66144cb0d4ecab7f2b5439edf36c203d9f31b5a","ref":"refs/heads/main","pushedAt":"2023-12-18T20:29:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Simulation script\n\nI have now written the script for running 10,000 simulations of coinfection dynamics.","shortMessageHtmlLink":"Simulation script"}},{"before":"359700795304e35f455f8ddab342f8078c19f484","after":"8055abb2690c998d673d1ce7eaf466e17d97c32a","ref":"refs/heads/main","pushedAt":"2023-12-15T21:55:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Added df_to_matrix function\n\nGenerates interaction matrices based on sampled parameter space of possible interactions.","shortMessageHtmlLink":"Added df_to_matrix function"}},{"before":"666317bdda4075defedceea93c14b69522cfd372","after":"359700795304e35f455f8ddab342f8078c19f484","ref":"refs/heads/main","pushedAt":"2023-12-01T22:08:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Create lhs.R\n\nA script to explore the parameter space for the ferrari function.","shortMessageHtmlLink":"Create lhs.R"}},{"before":"f197a97dc238a404eb61271a2190609edb5e3b8e","after":"666317bdda4075defedceea93c14b69522cfd372","ref":"refs/heads/main","pushedAt":"2023-11-16T18:23:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"Converted ferrari model to C++\n\nIt is fast and simulate many strains and coinfections at once","shortMessageHtmlLink":"Converted ferrari model to C++"}},{"before":"18949d6cf20675f930ef82ef50210f71c7edda28","after":"f197a97dc238a404eb61271a2190609edb5e3b8e","ref":"refs/heads/main","pushedAt":"2023-10-31T17:48:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"New and improved Ferrari model\n\nI have improved the Ferrari model so it can incorporate any number of strains with any type of interaction.","shortMessageHtmlLink":"New and improved Ferrari model"}},{"before":null,"after":"18949d6cf20675f930ef82ef50210f71c7edda28","ref":"refs/heads/main","pushedAt":"2023-10-19T17:28:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"japilo","name":"July Pilowsky","path":"/japilo","primaryAvatarUrl":"https://github.com/avatars/u/7558969?s=80&v=4"},"commit":{"message":"synbias: simulation components\n\nWelcome to the theoretical simulation portion of synbias, the Theme 2 project investigating how pathogen interactions affect observations of pathogen/viral richness.","shortMessageHtmlLink":"synbias: simulation components"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNS0wOVQxNzoxNToxMi4wMDAwMDBazwAAAARF12xE","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNS0wOVQxNzoxNToxMi4wMDAwMDBazwAAAARF12xE","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMC0xOVQxNzoyODoxNi4wMDAwMDBazwAAAAObNOkV"}},"title":"Activity ยท viralemergence/synbias"}