{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":769763493,"defaultBranch":"main","name":"lemur","ownerLogin":"treangenlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-03-10T01:35:56.000Z","ownerAvatar":"https://github.com/avatars/u/131216198?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1719547181.0","currentOid":""},"activityList":{"items":[{"before":"d9c8c402d03733bec387c88c9b53c9bd3065c7f9","after":null,"ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:59:41.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"}},{"before":"66ba98a548ccdf5e97166158bae7165ccd99df1c","after":"f9e4f1330841d0a964fca1041670937f9c70d5c6","ref":"refs/heads/main","pushedAt":"2024-06-28T03:59:37.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Fix ci (#12)\n\n* Remove log file redirect\r\n\r\n* Add missing quotation\r\n\r\n* Add miniconda version\r\n\r\n* Try v3\r\n\r\n* Add latest\r\n\r\n* try miniforge?\r\n\r\n* fix architecture https://github.com/conda-incubator/setup-miniconda/issues/344\r\n\r\n* Pin macos-13\r\n\r\n* Remove latest\r\n\r\n* ok try macos-12...","shortMessageHtmlLink":"Fix ci (#12)"}},{"before":"841f16ae65ce7b0dae81c3840cede20f24f207d8","after":"d9c8c402d03733bec387c88c9b53c9bd3065c7f9","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:21:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"ok try macos-12...","shortMessageHtmlLink":"ok try macos-12..."}},{"before":"3631ff9f3511aecb9883e1cf891f07d8bd4c7dcb","after":"841f16ae65ce7b0dae81c3840cede20f24f207d8","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:19:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Remove latest","shortMessageHtmlLink":"Remove latest"}},{"before":"4d9b7c7a94f6ed265db4aa9d4dde0f8b48df18b6","after":"3631ff9f3511aecb9883e1cf891f07d8bd4c7dcb","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:18:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Pin macos-13","shortMessageHtmlLink":"Pin macos-13"}},{"before":"c0808d01263eaadb51ddc3e5658db20bba039f51","after":"4d9b7c7a94f6ed265db4aa9d4dde0f8b48df18b6","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:16:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"fix architecture https://github.com/conda-incubator/setup-miniconda/issues/344","shortMessageHtmlLink":"fix architecture conda-incubator/setup-miniconda#344"}},{"before":"fa25d357eeaae21eb0b18db6474ddb3845c31460","after":"c0808d01263eaadb51ddc3e5658db20bba039f51","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:12:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"try miniforge?","shortMessageHtmlLink":"try miniforge?"}},{"before":"7c786931618ca22ac207303246b9e5a9e190561e","after":"fa25d357eeaae21eb0b18db6474ddb3845c31460","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T03:09:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Add latest","shortMessageHtmlLink":"Add latest"}},{"before":"8226c990959b95841cc8b51d07ad9f92e6c7df06","after":"7c786931618ca22ac207303246b9e5a9e190561e","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T02:58:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Try v3","shortMessageHtmlLink":"Try v3"}},{"before":"40770efdeca71acb9e7d3a56ab6f8024380dcc0c","after":"8226c990959b95841cc8b51d07ad9f92e6c7df06","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T02:49:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Add miniconda version","shortMessageHtmlLink":"Add miniconda version"}},{"before":null,"after":"40770efdeca71acb9e7d3a56ab6f8024380dcc0c","ref":"refs/heads/fix-CI","pushedAt":"2024-06-28T02:23:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Add missing quotation","shortMessageHtmlLink":"Add missing quotation"}},{"before":"7ca1992d28d7879ca57de9b7ed97633780c2a87f","after":"66ba98a548ccdf5e97166158bae7165ccd99df1c","ref":"refs/heads/main","pushedAt":"2024-06-27T15:00:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Updated error message if alignment data frame ends up empty","shortMessageHtmlLink":"Updated error message if alignment data frame ends up empty"}},{"before":"106238c80325a848476402ece630f6ac6b00b0da","after":"7ca1992d28d7879ca57de9b7ed97633780c2a87f","ref":"refs/heads/main","pushedAt":"2024-06-27T14:53:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"52688548dbd7eef38d80d651a54f426f43402f1e","after":"106238c80325a848476402ece630f6ac6b00b0da","ref":"refs/heads/main","pushedAt":"2024-04-01T16:45:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":null,"after":"52688548dbd7eef38d80d651a54f426f43402f1e","ref":"refs/heads/nsapoval-collapse-taxonomy-features","pushedAt":"2024-04-01T11:43:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Profile em (#8)\n\n* Set up code for profiling the EM function and added a bunch of docstrings to the functions.\r\n\r\n* Modified the EM_step() function to use a different method for the third step, all in numpy now.\r\n\r\n* Move lemur so that diff makes sense\r\n\r\n* cleaned up the profiling flags & added a few comments\r\n\r\n* changed the lemur file permissions back\r\n\r\n---------\r\n\r\nCo-authored-by: Bryce Lorenz Kille ","shortMessageHtmlLink":"Profile em (#8)"}},{"before":"7d63da454f2ad7b57758029513682f710d595ee5","after":null,"ref":"refs/heads/easy-install","pushedAt":"2024-03-27T21:26:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"}},{"before":"9a1391cdf366001bcd21467cf2b4da4bb79b41aa","after":null,"ref":"refs/heads/cleanup","pushedAt":"2024-03-27T21:26:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"}},{"before":"2d70adfe595d2ad0999ac8230ccdca40e5394fdb","after":null,"ref":"refs/heads/mem-dev","pushedAt":"2024-03-27T21:25:48.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"}},{"before":"2694f8589d617d056890aab89af0ddc963fd157a","after":null,"ref":"refs/heads/profileEM","pushedAt":"2024-03-27T21:23:19.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"}},{"before":"97d396a49040e88e100861dfa6a1c119ad6b4857","after":"52688548dbd7eef38d80d651a54f426f43402f1e","ref":"refs/heads/main","pushedAt":"2024-03-27T21:23:13.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Profile em (#8)\n\n* Set up code for profiling the EM function and added a bunch of docstrings to the functions.\r\n\r\n* Modified the EM_step() function to use a different method for the third step, all in numpy now.\r\n\r\n* Move lemur so that diff makes sense\r\n\r\n* cleaned up the profiling flags & added a few comments\r\n\r\n* changed the lemur file permissions back\r\n\r\n---------\r\n\r\nCo-authored-by: Bryce Lorenz Kille ","shortMessageHtmlLink":"Profile em (#8)"}},{"before":"7b893176fd30cbbb0fa5b35af8b23046a9497856","after":"2694f8589d617d056890aab89af0ddc963fd157a","ref":"refs/heads/profileEM","pushedAt":"2024-03-25T17:39:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MGNute","name":"Michael Nute","path":"/MGNute","primaryAvatarUrl":"https://github.com/avatars/u/761469?s=80&v=4"},"commit":{"message":"changed the lemur file permissions back","shortMessageHtmlLink":"changed the lemur file permissions back"}},{"before":"e1608754d1ee5f4cc9837f6ef692cda5520d2dde","after":"7b893176fd30cbbb0fa5b35af8b23046a9497856","ref":"refs/heads/profileEM","pushedAt":"2024-03-25T17:07:28.000Z","pushType":"push","commitsCount":34,"pusher":{"login":"MGNute","name":"Michael Nute","path":"/MGNute","primaryAvatarUrl":"https://github.com/avatars/u/761469?s=80&v=4"},"commit":{"message":"Merge branch 'profileEM' of github.com:treangenlab/lemur into profileEM","shortMessageHtmlLink":"Merge branch 'profileEM' of github.com:treangenlab/lemur into profileEM"}},{"before":"d759f212f17e45a94f0d8fa557dac0eb73c0c2e7","after":"e1608754d1ee5f4cc9837f6ef692cda5520d2dde","ref":"refs/heads/profileEM","pushedAt":"2024-03-25T15:55:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Move lemur so that diff makes sense","shortMessageHtmlLink":"Move lemur so that diff makes sense"}},{"before":"839fb9896982916187b2a7350bb417af6c222d21","after":"97d396a49040e88e100861dfa6a1c119ad6b4857","ref":"refs/heads/main","pushedAt":"2024-03-25T15:53:39.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Merge pull request #6 from treangenlab/mem-dev\n\nMem dev","shortMessageHtmlLink":"Merge pull request #6 from treangenlab/mem-dev"}},{"before":"a6f3c8ee537356feccd2c5496b4252fc3b9e86b3","after":"2d70adfe595d2ad0999ac8230ccdca40e5394fdb","ref":"refs/heads/mem-dev","pushedAt":"2024-03-25T15:22:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Update version","shortMessageHtmlLink":"Update version"}},{"before":"7ed8138e7da5ee5443e4cdc16eda08ea5c1508a4","after":"a6f3c8ee537356feccd2c5496b4252fc3b9e86b3","ref":"refs/heads/mem-dev","pushedAt":"2024-03-25T15:20:29.000Z","pushType":"push","commitsCount":28,"pusher":{"login":"bkille","name":"Bryce Kille","path":"/bkille","primaryAvatarUrl":"https://github.com/avatars/u/22685902?s=80&v=4"},"commit":{"message":"Update minimap2_AS flag to current CLI flags","shortMessageHtmlLink":"Update minimap2_AS flag to current CLI flags"}},{"before":"2b775a4beef34accd5f28a11b304726837e855a5","after":"839fb9896982916187b2a7350bb417af6c222d21","ref":"refs/heads/main","pushedAt":"2024-03-25T03:20:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Update test.yml","shortMessageHtmlLink":"Update test.yml"}},{"before":"88b4a0bf9e41d6c10eecec3e13b7c44676c54d84","after":"2b775a4beef34accd5f28a11b304726837e855a5","ref":"refs/heads/main","pushedAt":"2024-03-25T03:16:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Update test.yml","shortMessageHtmlLink":"Update test.yml"}},{"before":"443fa3aadbce551659e8ee67cfdb14a705f6da63","after":null,"ref":"refs/heads/nsapoval-CI","pushedAt":"2024-03-25T03:14:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"}},{"before":"e14421a9862a01979c5e670d2bbd98759207358d","after":"88b4a0bf9e41d6c10eecec3e13b7c44676c54d84","ref":"refs/heads/main","pushedAt":"2024-03-25T03:14:30.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"nsapoval","name":"Nicolae Sapoval","path":"/nsapoval","primaryAvatarUrl":"https://github.com/avatars/u/9452819?s=80&v=4"},"commit":{"message":"Merge pull request #5 from treangenlab/nsapoval-CI\n\nAdded basic test action","shortMessageHtmlLink":"Merge pull request #5 from treangenlab/nsapoval-CI"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEcXanDwA","startCursor":null,"endCursor":null}},"title":"Activity ยท treangenlab/lemur"}