Python library to facilitate genome assembly, annotation, and comparative genomics
-
Updated
Oct 16, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
SeqAn's official repository.
Inference of couplings in proteins and RNAs from sequence variation
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
Genome wide orthology inference and dNdS estimation
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
TREDPARSE: HLI Short Tandem Repeat (STR) caller
genomic alignment similarity search tool
BWT, FM-index and bits vector for analyzing DNA sequence data.
Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics
This code is meant for educational purposes only! Sequence alignment in Python 3.x using Needleman–Wunsch algorithm. Reference code from TyMA (2017 - University of Málaga)
A crate to manipulate multiple sequences alignments in Rust.
Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
El presente trabajo muestra la aplicación de algoritmos de alineación de secuencias conocidos como needleman-wunsch (global), smith-waterman (local) y semi-global con sus variantes (kband o afín de costo por gap).
Outlier detection in multiple sequence alignment
subset and spaced seed design tool
Easy Manipulation of Multiple Sequence Alignments (Concatenation and Format Conversion)
Differential Search Algorithm for Gene Sequence Assembly
Add a description, image, and links to the sequence-alignments topic page so that developers can more easily learn about it.
To associate your repository with the sequence-alignments topic, visit your repo's landing page and select "manage topics."