Utils and convenience functions for large-scale bio-image analysis.

Read and write Neuroglancer datasets programmatically.

Prediction of microstructural representativity from a single image

Fluospotter is an end-to-end pipeline designed for nuclei segmentation and puncta detection in fluorescence microscopy images.

Particle tracking by solving linear assignment problem.

A scalable implementation of WobblyStitcher for 3D microscopy images

This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO

Command-line utilities to process images from the PerkinElmer's Operetta microscope

Predicting cell cycle stage from 3D single-cell nuclear-stained images

Utilities for Philips XL30 Scanning Electron Microscope: annotation, overlay and auto-coloring of images aimed at producing both esthetic and scientifically valuable output

napari plugin for analyzing fluorescence-labeled proteins redistribution

Implementation for multiples algorithims for resolution enhancement based in MSSR(Mean Shift)-Laplacian-DoG(Difference of Gaussians)-Hessian.

Distributed segmentation for bio-image-analysis

This is our capstone project for the Data Science workshop at neuefische. We worked together with the Institute of Biochemistry from the Veterinary Medical School Hanover to design an application for automated recognition and quantification of Neutrophil Extracellular Traps (NETs)

Simple GUI tool based on tkinter to enable coordinate transformation between TEM and LM images.

This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.

Microsnoop: A generalist tool for microscopy image representation

Semantic segmentation on Electron Microscopy dataset using U-Net

RESTful API for myovision project

A python library for image stitching with distortion correction