Single-cell dimensionality reduction toolkit
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Updated
Oct 21, 2024 - Jupyter Notebook
Single-cell dimensionality reduction toolkit
Single-cell dimensionality reduction evaluation and benchmarking toolkit
Tools for Imaging Flow Cytometry
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
Image Processing tools for Imaging Flow Cytometry
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
An R package for analyzing high-dimensional cytometry data using the tidyverse.
Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data
Official implementation of GateNet
an interactive explorer for flow cytometry data
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Repository for MODS subphenotype preprint, data, and code.
CyFlowRec is software for collecting FCS (Flow Cytometry Standard) files received via the serial port (RS232 serial interface) from a Partec flow cytometer sent via the TRANSFER function.
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
Image Mass Cytometry analysis pipeline
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Easily install and load packages from the tidyomcis ecosystem
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